Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01791 ATGGAAGAAGATCAAGAAGTGATTAAACATGTTTGCAAAATCTGTAGCAAGAGTTTTTCTTGTGGTAGATCATTAGGTGGTCACATGAGATCACATGATCATCTAAAAATCAATGATCATCATGATCATGATGATGTTGATGATGATGATGGTGATGAGTTTGTTGTTGATGCTGCTGCAACAACAATGAAGAAAGAACAAGTTTGTTCTGAAGGGTATTATGGTCTTAGAGAAAATCCAAAGAAAACTTGGAGAGTACTCAATGATTCAACTATTGATGAAGATTCAACTTTTGATGTTGTTTTGGATAAATTGTGCAAAGAATGTGGTAAAGGTTTTCAATCTATGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCGGATAAAGAACGAGTTTCGAGTAATAAGAAGAAGAATCGTAGTTTTGAATTTGATGATGAAAAAGAAGAATCTAATGCAACTGTTCTTCCTAATAGAAAGAGAAGATCCAAAAGAAGATTAAGAACAAGGTACATAAATAGTGGTAACACTTCTTCTGTTGTGAATTTTATTGCAAATTCTTTAGTTTCAAGTTCTGTTTCTGATGAAGAAAAAGAACAAGAAGAAGTTGCTATGAGTTTGATTATGCTTAGTAGAGATGTTCGACCTTGGTGTGGTCTCAAACTCAATTCTATTGCTGAATTTTCTGATAATAATGATGATGATAATGGTGATGATGATGATAACAACTCTTTGGAATTAGAAGCTCCATTAACTCATTTAGTTTCTAAGATTGAAGAGAAAAAAAGGGTTATCTCAAATGGTTCTGAGATTGCTAAAGTGACCAAAAAACCAAAGAAGTTGGATTTTGGCAATAGTGTTTCTACAAATCTGAATTCCAAAGGGAAAAGTTTGGAAGTTTTTGCTGATGAGAGTGAAGGAAATGATGATGGATTGAAGATGAAGAAAACTAAGAAAACTAGAGTTTCTGTTATTGAGAATGGAAAGGATGATGATAAGAAGAAGGAAAAGATGGAGATTGAGGTTGATTCTGATTCAGCATTTGAAGTCAATGTAAGATCAAAATCAGGTACTACTAATCCTACAAAGTACACTTCATTGAAGGAAAAGTTTTTTGATTCTGAAACTAAGGTTACACTTGCATCAGAAGGTGAATCAAGCAAGAGAAAATATAATAAGAGAGGAAAATTTGAGTGTGCTACTTGCAACAAAATTTTCCAATCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAGAACAAAAGGGTGTAATTCTTCAAGAATTGATCAAAGTAGTGAAAATGAAAACATTGCTGAATTGGAAATGGAATTGGAAGTGGAAGTAGATGTGAAGATCAATGTTAATGCTGAGGGAAGAAGCATAGGAAGTGAAAGAGTTTTGCTTGAGGAAGAAGTTCCTGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTACTGCTGCAAGTATTGATGAAGAAAGAAATGGTCATTCTGAGATTTACAAATCATGGTGGTTAGTTGGAGGTAGCAGCCTTAAGCAAGAGACAATGGCAGTAGGCCTACTGTCAAGCTAG 1581 0.3409 MEEDQEVIKHVCKICSKSFSCGRSLGGHMRSHDHLKINDHHDHDDVDDDDGDEFVVDAAATTMKKEQVCSEGYYGLRENPKKTWRVLNDSTIDEDSTFDVVLDKLCKECGKGFQSMKALFGHMKCHSDKERVSSNKKKNRSFEFDDEKEESNATVLPNRKRRSKRRLRTRYINSGNTSSVVNFIANSLVSSSVSDEEKEQEEVAMSLIMLSRDVRPWCGLKLNSIAEFSDNNDDDNGDDDDNNSLELEAPLTHLVSKIEEKKRVISNGSEIAKVTKKPKKLDFGNSVSTNLNSKGKSLEVFADESEGNDDGLKMKKTKKTRVSVIENGKDDDKKKEKMEIEVDSDSAFEVNVRSKSGTTNPTKYTSLKEKFFDSETKVTLASEGESSKRKYNKRGKFECATCNKIFQSYQALGGHRASHKRTKGCNSSRIDQSSENENIAELEMELEVEVDVKINVNAEGRSIGSERVLLEEEVPEIRNFLDLNLPATAASIDEERNGHSEIYKSWWLVGGSSLKQETMAVGLLSS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01791 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 397 424 IPR013087 -
Trre6g01791 526 SUPERFAMILY beta-beta-alpha zinc fingers 9 34 IPR036236 -
Trre6g01791 526 MobiDBLite consensus disorder prediction 130 157 - -
Trre6g01791 526 Gene3D Classic Zinc Finger 1 131 - -
Trre6g01791 526 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Trre6g01791 526 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Trre6g01791 526 SUPERFAMILY beta-beta-alpha zinc fingers 105 419 IPR036236 -
Trre6g01791 526 ProSitePatterns Zinc finger C2H2 type domain signature. 399 419 IPR013087 -
Trre6g01791 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Trre6g01791 526 MobiDBLite consensus disorder prediction 130 162 - -
Trre6g01791 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Trre6g01791 526 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 507 - -
Trre6g01791 526 SMART c2h2final6 104 126 IPR013087 -
Trre6g01791 526 SMART c2h2final6 397 419 IPR013087 -
Trre6g01791 526 SMART c2h2final6 10 32 IPR013087 -
Trre6g01791 526 Pfam C2H2-type zinc finger 397 421 - -
Trre6g01791 526 Pfam C2H2-type zinc finger 10 32 - -
Trre6g01791 526 Pfam C2H2-type zinc finger 106 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01791 Trre-Chr6 14768013 14769593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01791 394 487 C2H2 Transcription Factor Family AT2G45120 36.607 2.92e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g01791 zf-C2H2_6 1.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01791 - - tpra:123917472 786.178