Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01790 ATGTACCCTCAACAACAGTACCAAATTTCACCCTTCAATTTTCAGCAACAGCTACAACCCTATTATTCATCATCACTTCATCCTCCTGGTACTGACCCAGTTGCAAATTCAGCACCTTTTTCTGCTCCTGTTTCTGTTTATGCGTCACAAACAACAGATTATCAGAATTGGATCGTTCCACAATCTGAACATATCGCATATGATCCTGCTGTTGGTTCATCGTACGAGGCTTCAGCAGCGTCTGCAAGTTTGGTTCCTGCATGTTATGCTTCATGGCCATATCCAAATTATGGCAATGATACTACAACAACGTTGCCTAACCCAACTAAAGTCTCCAAAGCTTTGAGATGTGAAGTGTGTAAAATTGATCTCAATAGCAAAGATTCTTATGAAAAGCATATAGCTGGAAAGAAACACAAGAAGAATTTACAGGTACAGACTAATCCTACTATTGCATCTCATGTGAATGTACAATGTGACACTAGTAGTATCCAAGGACAATCGTTAATTGGTCCCGTAGCCGAGCAATTAGAGCCTAAGAAACAGGTGGTACCTAGTGGTGGTGCACCTGCTGATTCTGCAAAGGTTTGCTCAACTTGCAATGTCCTGTGCACTAGTCAAGATACATATAACAAACATATTGCTGGGAAAAAACATGCTAAACAGGTTAACTTGATTGCTAATAATGGCATTGGTCCATCTATTGCTGAATTCAAACGTAGCAGTGTTGGCCCATTGCAAAAAGCTGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAATTTGCAAGATTACTTGTAACAGCAGGGATATTTACATTACACACTTAGCCGGTAAGAAACATTTGAAGAACTTGGAGAAACTCTCAAATCCAAAAACCGATGCCGGCACCAGTGCCACCACCACCGCCACTGCAGCAAGTACAAATACTTTAATCGGGCCACAGGAAAAGCCATATACTGATAAACCAAAGAAGGCACCAGAAGTTGATATCGAGACGAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGCAGTTAATGAAATCAAATTGTGCACCTTATGCAATGTAGTGTGTAATAGCCAGAAGGTGTTCGATACTCACCTTGTTGGCCACAAACATCTTGCTATGGTGAAGAAGGCAGGGTCAAGCACTGGTTGA 1164 0.4141 MYPQQQYQISPFNFQQQLQPYYSSSLHPPGTDPVANSAPFSAPVSVYASQTTDYQNWIVPQSEHIAYDPAVGSSYEASAASASLVPACYASWPYPNYGNDTTTTLPNPTKVSKALRCEVCKIDLNSKDSYEKHIAGKKHKKNLQVQTNPTIASHVNVQCDTSSIQGQSLIGPVAEQLEPKKQVVPSGGAPADSAKVCSTCNVLCTSQDTYNKHIAGKKHAKQVNLIANNGIGPSIAEFKRSSVGPLQKAAKKIKVAQSAWCEICKITCNSRDIYITHLAGKKHLKNLEKLSNPKTDAGTSATTTATAASTNTLIGPQEKPYTDKPKKAPEVDIETKKRKVVEGGAAVNEIKLCTLCNVVCNSQKVFDTHLVGHKHLAMVKKAGSSTG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01790 387 SUPERFAMILY beta-beta-alpha zinc fingers 257 290 IPR036236 -
Trre6g01790 387 SUPERFAMILY beta-beta-alpha zinc fingers 187 224 IPR036236 -
Trre6g01790 387 SMART c2h2final6 115 139 IPR013087 -
Trre6g01790 387 SMART c2h2final6 351 373 IPR013087 -
Trre6g01790 387 SMART c2h2final6 195 219 IPR013087 -
Trre6g01790 387 SMART c2h2final6 259 283 IPR013087 -
Trre6g01790 387 MobiDBLite consensus disorder prediction 294 330 - -
Trre6g01790 387 SMART ZnF_U1_5 348 382 IPR003604 GO:0003676|GO:0008270
Trre6g01790 387 SMART ZnF_U1_5 192 226 IPR003604 GO:0003676|GO:0008270
Trre6g01790 387 SMART ZnF_U1_5 112 146 IPR003604 GO:0003676|GO:0008270
Trre6g01790 387 SMART ZnF_U1_5 256 290 IPR003604 GO:0003676|GO:0008270
Trre6g01790 387 SUPERFAMILY beta-beta-alpha zinc fingers 91 145 IPR036236 -
Trre6g01790 387 PANTHER ZINC FINGER PROTEIN 385B-LIKE 116 229 - -
Trre6g01790 387 SUPERFAMILY beta-beta-alpha zinc fingers 347 381 IPR036236 -
Trre6g01790 387 Gene3D Classic Zinc Finger 174 225 - -
Trre6g01790 387 Gene3D Classic Zinc Finger 328 382 - -
Trre6g01790 387 Gene3D Classic Zinc Finger 244 290 - -
Trre6g01790 387 Gene3D Classic Zinc Finger 100 146 - -
Trre6g01790 387 MobiDBLite consensus disorder prediction 294 317 - -
Trre6g01790 387 Pfam Zinc-finger of C2H2 type 196 219 - -
Trre6g01790 387 Pfam Zinc-finger of C2H2 type 260 283 - -
Trre6g01790 387 Pfam Zinc-finger of C2H2 type 116 139 - -
Trre6g01790 387 Pfam Zinc-finger of C2H2 type 353 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01790 Trre-Chr6 14759145 14763811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01790 186 382 C2H2 Transcription Factor Family AT5G61190 29.949 2.09e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g01790 zf-met 1e-06 CL0361