Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01787 ATGTTTCCAACATTTTCACTTTTCTTATATTTTCTCCTTATTTCCAACTTCTACACAAAAACAATTGCATTTACATTAGGAAACCATACTGATAATTTGTCATTGCTTAAATTCAAAGAATCAATATCCAAAGATCCTTATGAAATCTTGCTTTCTTGGAATAGTTCAACACACTTTTGCAACTGGCATGGAATCACATGCAATATGCATCAAAGAGTTATAGAGTTGAAGTTACCAAGATACAAGTTGCATGGTTCCTTATCTTCTCATGTTTCCAATCTCTCTTTTCTCAGATACTTCAACCTTGAAGACAACAATTTCTTTGGAAAAATCCCACAAGAGTTCGGTAAGTTGTTACGATTACAAGAACTCTATCTCGCCAATAATTCGTTTGTCGGAAACATTCCTACAAACTTGACAAATTGTTTTGATCTTAAGTACTTAAACTTGAGAGGGAACAATTTGATCGGAAAAATACCGATTGAAATGTGCTCTCTTCAAAAGCTTCAAGAATTGAATGTTAGAGGAAACAATTTGATTGGAAGAGTCCCATCATTTATAGGAAATCTTTCATTCTTAACAACTCTTACAATTTCTAGTAATAACTTAGAGGGAGATATTCCACAAGAAATATGTCGCCTCGAAAGCTTGACACAAATATCATTTGGACTCAACAAACTATCTGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACTTTGATCTCGGCTACAATGAACCGGTTTGATGGCTCTCTTCCAGCTAACATGTTCAACAACCTCCCTAATCTCCAAGTGTTTTCGATCGGTGGTAATCAAATATCAGGTCTAATGCCAACTTCTGTTGCAAATGCTTCTACCCTTACATATGTTGATATGAGCAGAAACTATTTTGTTGGACAAATTCCAAGTCTTGGGAGGCTACAATACCTTTGGAGGCTAAATTTGGAAATAAATTATTTTGGTGACAATTCAACTAAGGATTTGGAATTTTTAAAACCATTAACAAATTGTAGTAACTTGCAAGAGGTTTCTATATTCCATAATAATTTTGGAGGTAGTTTGCCAAGTTTCATAGGTAACTTTACCAATCAACTTAGTCGATTGTATCTTGCGAGTAATCAAATATCCGGAAAAATACCTTTAGAAGTAGGAAATTTAAATAATTTAATTCTCTTGAACATGAAAAATAATCGTTTTGAAGGGACGATTCCTTCAACTATCGGGAAGTTTCAAAAGATGCAAGTGTTAAGTTTCCGCGGAAACAAGTTGTCCGGAGAAATACCATCATCTATAGGAAACCTTAGTCAGCTTTATTATTTGGATTTTGGGGAAAATATGTTAGAAGGAAATATTCCTTCAAGCATAAGGAACTGCCAAAACTTACAAATGTTATACCTTTCGAAAAACTACCTTAGAGGAACCATACCCTTAGAGGTTTTCAGTCTTTCATCTTTAACAACAGGATTGTACTTATCACAAAACTTGTTGAGTGGAAGTCTTCCTGACAAATTTGGTCATCTACAAAATATTGTGCATATTGATGTCTCTAACAATCGTCTGTCCGGTGAAATTCCTAGAACCGTGGGGAAGTGCATAAGCTTAGAATACCTTCTTTTGAATGGTAATGCATTCAATGGAAGTATACCATTCTCTTTGGAATCTCTCAAAGGCCTTCGACAATTAGACCTTTCAAGAAATCAATTTTCCGGATCAATTCCAAAAGTTTTGCAAAATATTTCTTTCTTAGAATACTTCAATGTATCTTTCAACATGTTGGAGGGAGAAGTACCAATTGAAGGTGTATTTAAAAATGCAAGTGCACTATCTATGATTGGAAATAATAACCTTTGCGGAGGAATTTTGGAGTTGCATCTACTGCCATGCTCTATTGAAGGTACGAAACTTTCAAAACACCATAACTTCAAGTTGATAGCAGTGACAGTTAGTGCAGTTTCTTTTCTTATTATCATGCTATTTTTTCTAACTGTCTATTGGAAGAGAGGAACAATAAAAAAATCATCTTTTGATTCACTTATAAGTCATCAGATGGTTAAGGTTTCGTACCAAAACCTACATAGTGCAACCAATGGGTTTTCGACAAGCAACTTGATAGGATCTGGAAGTTTTGGCTCCGTCTACAAAGGAACACTTGAGTCGATAGGTGGAGTTGTAGCCATTAAAGTCCTAAACCTTAAAATGAAGGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTAAAAAATATTAGACACCGAAACCTGGTTAAAATTTTGACATGTTGTTCTAGCACCGATTACAATGGCAATGAATTTAAAGCTCTCGTATTTGAGTACATGAAAAATGGAAACTTAGAAAGTTGGTTGCATCCTACAACAGAAATTACCGATCAACCAAAATCATTGGATCTCACGCAAAGGTTAAATATTATTACTGATGTTGCGTCAGCATTTCGTTATCTTCACTACGAATGCGAACAACCTGTCGTTCATTGTGATTTAAAGCCTGCAAATGTTCTTATAAATGACTTACTTGTAGCTCAAGTAAGTGATTTTGGCTTAGCAAGGTTGTTGTCAAGTGTTGGAGTCTCTCTGATGCAAAGTAGCACAACTGGAATAAAGGGAACAGTCGGTTATGCACCCCCAGAATATGGAATGGGATCCGAGGTTTCAATTGAAGGCGACATGTATAGCTTTGGAATACTTGTATTAGAAATGTTAACCGGAAAGAGACCGACAGATGAAATGTTCAAAGATGATCATAATATTCATAATTATGTGAAACTTTCAATTCCGGATCATCTTTTCCAAACTGTGGACCGATCTATTCTTGCCATTGAATTAGACTACGATACTAACAACGAGATCGTTGGCGGTATACATCCTAATGTAGAGAAATGTTTACTTTCAATTTTTAGGATTGCACTTTCTTGTTCAATGGAATTACCAAAAGAAAGAATGAATATGGTTGATGTGATAAGAGAGCTCAATATCATTAAAAGTTTCTTTCCTATTGAGATTCAATGA 3036 0.3498 MFPTFSLFLYFLLISNFYTKTIAFTLGNHTDNLSLLKFKESISKDPYEILLSWNSSTHFCNWHGITCNMHQRVIELKLPRYKLHGSLSSHVSNLSFLRYFNLEDNNFFGKIPQEFGKLLRLQELYLANNSFVGNIPTNLTNCFDLKYLNLRGNNLIGKIPIEMCSLQKLQELNVRGNNLIGRVPSFIGNLSFLTTLTISSNNLEGDIPQEICRLESLTQISFGLNKLSGTFPSCLYNMSSLTLISATMNRFDGSLPANMFNNLPNLQVFSIGGNQISGLMPTSVANASTLTYVDMSRNYFVGQIPSLGRLQYLWRLNLEINYFGDNSTKDLEFLKPLTNCSNLQEVSIFHNNFGGSLPSFIGNFTNQLSRLYLASNQISGKIPLEVGNLNNLILLNMKNNRFEGTIPSTIGKFQKMQVLSFRGNKLSGEIPSSIGNLSQLYYLDFGENMLEGNIPSSIRNCQNLQMLYLSKNYLRGTIPLEVFSLSSLTTGLYLSQNLLSGSLPDKFGHLQNIVHIDVSNNRLSGEIPRTVGKCISLEYLLLNGNAFNGSIPFSLESLKGLRQLDLSRNQFSGSIPKVLQNISFLEYFNVSFNMLEGEVPIEGVFKNASALSMIGNNNLCGGILELHLLPCSIEGTKLSKHHNFKLIAVTVSAVSFLIIMLFFLTVYWKRGTIKKSSFDSLISHQMVKVSYQNLHSATNGFSTSNLIGSGSFGSVYKGTLESIGGVVAIKVLNLKMKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDYNGNEFKALVFEYMKNGNLESWLHPTTEITDQPKSLDLTQRLNIITDVASAFRYLHYECEQPVVHCDLKPANVLINDLLVAQVSDFGLARLLSSVGVSLMQSSTTGIKGTVGYAPPEYGMGSEVSIEGDMYSFGILVLEMLTGKRPTDEMFKDDHNIHNYVKLSIPDHLFQTVDRSILAIELDYDTNNEIVGGIHPNVEKCLLSIFRIALSCSMELPKERMNMVDVIRELNIIKSFFPIEIQ 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01787 1011 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Trre6g01787 1011 SUPERFAMILY L domain-like 31 323 - -
Trre6g01787 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 672 782 - -
Trre6g01787 1011 Pfam Protein kinase domain 703 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01787 1011 Gene3D Ribonuclease Inhibitor 311 638 IPR032675 -
Trre6g01787 1011 Gene3D Ribonuclease Inhibitor 185 310 IPR032675 -
Trre6g01787 1011 PANTHER OS04G0122200 PROTEIN 98 213 - -
Trre6g01787 1011 SMART LRR_typ_2 190 214 IPR003591 -
Trre6g01787 1011 SMART LRR_typ_2 118 142 IPR003591 -
Trre6g01787 1011 SMART LRR_typ_2 510 534 IPR003591 -
Trre6g01787 1011 SMART LRR_typ_2 485 509 IPR003591 -
Trre6g01787 1011 SMART LRR_typ_2 263 286 IPR003591 -
Trre6g01787 1011 SMART LRR_typ_2 558 581 IPR003591 -
Trre6g01787 1011 SMART serkin_6 701 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01787 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 783 1009 - -
Trre6g01787 1011 ProSitePatterns Protein kinases ATP-binding region signature. 707 730 IPR017441 GO:0005524
Trre6g01787 1011 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Trre6g01787 1011 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 66 331 - -
Trre6g01787 1011 Gene3D Transferase(Phosphotransferase) domain 1 783 1006 - -
Trre6g01787 1011 SUPERFAMILY Protein kinase-like (PK-like) 677 1001 IPR011009 -
Trre6g01787 1011 Gene3D Phosphorylase Kinase; domain 1 665 782 - -
Trre6g01787 1011 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Trre6g01787 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Trre6g01787 1011 ProSiteProfiles Protein kinase domain profile. 701 1006 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01787 1011 SMART LRR_sd22_2 118 137 - -
Trre6g01787 1011 SMART LRR_sd22_2 558 584 - -
Trre6g01787 1011 SMART LRR_sd22_2 263 289 - -
Trre6g01787 1011 SMART LRR_sd22_2 461 482 - -
Trre6g01787 1011 SMART LRR_sd22_2 413 439 - -
Trre6g01787 1011 SMART LRR_sd22_2 365 386 - -
Trre6g01787 1011 SMART LRR_sd22_2 166 192 - -
Trre6g01787 1011 SUPERFAMILY L domain-like 335 621 - -
Trre6g01787 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 332 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01787 Trre-Chr6 14738018 14741189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01787 20 1006 Receptor kinase-like Gene Family AT3G47570 45.000 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g01787 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01787 - - gmx:100792724 1261.51