Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01784 ATGGTGGAACTCACAGAAGAACAAATAAAACAAATGGAAGCGAATCGCGTTGCTGCATTAGCAAAACGAAAAGCTTTCTTAGAATCCAATTCTCAACAACCTCAACGAAACCCTTGGAATCTTTTCAAATGCCAGAAAATTGCTCAACCTCAACCATTTCAACCTAAACCTGAACCTGAGCCTAATTTCAAATTCCTCGTGAGACTTGAAATTTGTTCGCATGATTCTTTCGCAATTTCTCCTCTTCCTGTTCCTAATTTCCATTTTCCAACCTTTGATACTTGTTTCAGCATTCTCAATAACATTCTCTCACGTATGGATGTGGATCCATCACATTTTACTCAGACAAGTGCGGGCGGGAAAGCCTGTGTGTTCAAATTAGCGGAATACCGTAGTGTTTTGAAGTTGTTAAAGGCGGAGATTGAGGTGGAGGAGATTCCATGGAACACTTTCAATGTGGTTGAGAAGCTTTCACATTTGGAGGGGAGGTGGACTGCGGTGAGACCGGAACATCTGAGTGATGATGGGGTCGATGGTTTGATTAGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCATTTCAAATGGATGGTTTAAGGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATTGCAATTGCAGGGTGTTTTATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGATATTCATGGGCGGAAGAAATTGAGCGGTGGCTTCCTTCCTGCTTGCCTGCCGATATCCATCTCGTTTTTGGCCATCAAGACAATCCTGTATATCTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTTTGATTGTTGATGAATCACATCATGTACGCGCTACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAATCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTATCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGAAAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGGAAATTTTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTTTCAGATTGTCGTTGAAGAGATCAGATATAGTTGCAGCGAAAACTGCAGTTGGGGCTTTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGAGATGCCTTTGGAAAGTTTGGATGAACATGATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCTTTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTATATATGTGACAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAACCTCATTTAGATCATCACCGGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTTTCAACAGCACAAGATGTTGTGTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTCGGATGAATCGAATTGGAAAAATTTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGCAAATATGATGCATTGGAAGAGATTAAGGTTGAAGGTATTTCTTCTTTAGGCCCATCCTTGAAAATGAAAAGATTTAAAGAACAATCTGCGTCCATAGATGCATCTGTTAAAAGACAATTAGATACAGAACTCTCTGCAGTGAAATTAAATGAAACAGCAACTAATCTAGATGATGACTCTGGTCTTGTAAACAACATAAATCAGGGTGCTAATATTATGGTTGATAGTGTTTCCTTCCAAGAGTTAGGCAAGGCTTCAGTTTTGGGTGGAATTTGTGATGTAGATGTTTTTAATGCTGCGGATGGATGTTCTGAAGAGAGTTTTGAGGACAAAGATGAAGTAATAGAGGATAAGAAATCAACTTCAAGAACAGATGCAAATGACGACCAGCCCAGTTATGCTGTTGAAACTGAAGCACATTGCTCTCATCAAGTTAATTCTTTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGCTTTTTGGGTAAAGATGCAAGACCACAGCCACTTTGTGAAAATTTCCGACCAGAGGACCTTGAGCTGCTGAGTCCTGCTGATGCTGATGAGAAGCAGGGTACAGAGTCTACATCTGTCAAGGATAATCCTGCTTATAGGAATGCTCTTCTGGATTTTGCAAACGAGTGGAAGAATTTAAGGTCAATCGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTAATAACCACAACAACAAGGGATTAATAAATGGTGGAAGCAAAAGGCGCATGACTCCCTTAGTGGACATCAGCTATCCCTTACCACCAGATGCTGTTTGGAAAACGGTTTTTCTACGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAACAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACCAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGCATATAAGACCTTTGTCCATCGAAAGACGGAGAGCGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGGACGAAGATGCTTGAGAAGCTTGTCAAAGAACCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCCTGCCATCACGATGTTACTGCTGTACAATGTGCTGACCGACGCATTATAAGAGCAAATGCCCGGAAACAACTAAAAGAATTGATGAATACCATGAAAAATAGTATGAAGGGTGTTGCTGGCACTAATAATAAGGACCAAATGCTTTACATGGAGCAAGAAAGTATGCACGAGGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTACTCGCTAGCTAATAGCCAAGAAAGTGGAGATACAGCCTGTTAA 3495 0.4106 MVELTEEQIKQMEANRVAALAKRKAFLESNSQQPQRNPWNLFKCQKIAQPQPFQPKPEPEPNFKFLVRLEICSHDSFAISPLPVPNFHFPTFDTCFSILNNILSRMDVDPSHFTQTSAGGKACVFKLAEYRSVLKLLKAEIEVEEIPWNTFNVVEKLSHLEGRWTAVRPEHLSDDGVDGLIRKLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPSCLPADIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLERKWALLIVDESHHVRATKKTSEPGEIKAVLDVASEIKRIILLSGTPSLSRPFDIFHQINMLWPGLLGKTKYEFAKTYCDLKYIKGVQGKFFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIFRLSLKRSDIVAAKTAVGALKIDASENASEEMPLESLDEHDDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFAHHHKVLDGVQEYICDKGVGFVRIDGHTLPRDRQSAVTSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTSDESNWKNLNKSLHRVSSTTDGKYDALEEIKVEGISSLGPSLKMKRFKEQSASIDASVKRQLDTELSAVKLNETATNLDDDSGLVNNINQGANIMVDSVSFQELGKASVLGGICDVDVFNAADGCSEESFEDKDEVIEDKKSTSRTDANDDQPSYAVETEAHCSHQVNSLRFEVSPYTGRIHLYTCFLGKDARPQPLCENFRPEDLELLSPADADEKQGTESTSVKDNPAYRNALLDFANEWKNLRSIERNKLLGKPLQLPLAVELCYLSESNNHNNKGLINGGSKRRMTPLVDISYPLPPDAVWKTVFLRSGRGKKEKEYTQGWSPEDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSIERRRAYIEKVAPNIAKRTKMLEKLVKEPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCADRRIIRANARKQLKELMNTMKNSMKGVAGTNNKDQMLYMEQESMHEDDILVPVPGSAYSLANSQESGDTAC 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01784 1164 Gene3D - 175 410 IPR038718 -
Trre6g01784 1164 Gene3D - 979 1116 - -
Trre6g01784 1164 CDD SF2_C_SNF 485 614 - -
Trre6g01784 1164 SMART ultradead3 188 384 IPR014001 -
Trre6g01784 1164 Pfam Helicase conserved C-terminal domain 502 603 IPR001650 -
Trre6g01784 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 416 IPR027417 -
Trre6g01784 1164 MobiDBLite consensus disorder prediction 748 773 - -
Trre6g01784 1164 CDD HNHc 1048 1088 IPR003615 -
Trre6g01784 1164 Gene3D - 445 688 IPR027417 -
Trre6g01784 1164 FunFam SNF2 DNA repair protein, putative 165 415 - -
Trre6g01784 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 649 IPR001650 -
Trre6g01784 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 655 IPR027417 -
Trre6g01784 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 365 IPR014001 -
Trre6g01784 1164 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 6 1105 - -
Trre6g01784 1164 CDD DEXHc_HARP_SMARCAL1 192 416 - -
Trre6g01784 1164 SMART helicmild6 520 603 IPR001650 -
Trre6g01784 1164 Pfam HNH endonuclease 1050 1086 IPR002711 GO:0003676|GO:0004519|GO:0008270
Trre6g01784 1164 Pfam SNF2-related domain 210 458 IPR000330 GO:0005524|GO:0140658
Trre6g01784 1164 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01784 Trre-Chr6 14703481 14720325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01784 508 621 RAD5 or RAD16-like Gene Family AT1G11100 36.842 3.45e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre6g01784 SNF2_N 5.9e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01784 K25861 - gmx:100788690 1732.61