Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01777 ATGAATTGTAGTCTTGAAAAATTGGATCTTTCTGTCAATGGATTTTTCGGTAAACCGCCTAAGGAAGTTGCTAACTGCAAGAATTTAGAGATTCTAAATCTTTCTAGTAACAAATTTAGTGGTCAAATACCACATGAAATTGGTACAATTTCTGGTCTCAAATCACTGTTCTTGCAGAATAACACCTTTTCAAGAGATATTCCAAATACCCTTTTGAATTTGACCAATTTGTTTATCTTGGATATAAGTAGAAACCATTTTGGTGGCGAGGTACAACCGATTTTTGGTAAATTCAAGCAATTGAAGTTTCTTTTGTTACACACAAATTCTTATGTTAAAGGATTGAATTCATCAGGAATTTTCACTTTGACTAATCTTACAAGATTAGACTTAAGTTCCAACAACTTTTCAGGTCCATTACCTATTGAAATTTCTCAAATGTCTGGTCTCATATTCTTATCATTAAGCAACAATAACTTCAATGGTTCTATTCCTTCTGAATTAGGAAACTTGAGTAAATTGCAAGCAATTGAACTTTCTTTCAATAGTTTCGATGGAAAAATTCCACCAAGCCTTGGAAACTTGAATTCTCTTCTTTGGTTAATGCTTGCAAATAATTCATTAACAGGCGAAATCCCTCGTGAGTTAGGTAACTGTTCAAGTTTAATATGGTTGAACCTTGCAAACAACAAACTCACTGGAAAATTTCCTTATGAGTTGACCAAAATTGGAAGAAATGCTATGGAAACATTTGAATCAAATCATAGAAACATGGTTGGAGTTGTTGCTGGAAATAGTGAGTGTTTGTCGATGAGAAGATGGATACCTGCCGATTACCCTCCATTCAGTTTTGTGTATAGTATCTTAACAAGGAAGAATTGTAGATCCCTTTGGGATAGATTGCTTAAAGGTTATGGAATTTTTCCTATGTGTGCATCTGAACCATCAACTAGATCATCTCATAAATTTGGTTATGTTCAGTTAAGTGGTAATCAAATAAGTGGTGAAATTCCTTCCGAAATTGGAACCATGTTAAATTTCAGTATGTTGCATTTAGGAGACAACAAATTCAGCGGAAAATTTCCAAAAGAAATTGGTGGTTTGCCACTTATAGTGTTGAACATGACTAGGAACGAATTTTCTGGTGAAATTCCTAGGGAAATTGGTAACATGAAGTGTATGCAAGATCTTGATTTGTCTTGGAACAATTTCTCAGGGACATTTCCAAAAAGTTTGGTCAATTTGGACGAACTTAGCAGGTTCAATATCTCATATAATCCTTTATTATCTGGTACAGTACCACCATTAGGTCACTTGCTTACTTTTGATAAGGATTCATATTTAGGTAAAGCAAAAGTAACTGATTTTGGACTTGCTAGAGTTGTTGATGTTGATGATAGTCATGTGAGTACAATTGTAGCTGGAACTGTTGGTTATGTTGCACCTGAATATGGACAAACATGGCATGCTACAACAAAAGGTGATGTGTATAGTTTTGGTGTGTTGATTATGGAGTTGGCAACTGGTAGAAGAGCTGTGGATGGAGGAGAAGAATGTTTGGTTGAATATGTTAGGCGTGTCATGGATAATGGTAGAAATGGATTTAGCCATTTTGGGCTAGTTGGTGGTGCAAAGGAGATGTTTGAGTTACTTCAAGTTGGAGTAAAGTGCACAAATGATTCACCACAAAATAGACCTAACATGAAAGAGGTTCTAGCTATGTTGATTAAGATATTCAATTTTTATAGAAATTCAAATTATTGA 1764 0.3458 MNCSLEKLDLSVNGFFGKPPKEVANCKNLEILNLSSNKFSGQIPHEIGTISGLKSLFLQNNTFSRDIPNTLLNLTNLFILDISRNHFGGEVQPIFGKFKQLKFLLLHTNSYVKGLNSSGIFTLTNLTRLDLSSNNFSGPLPIEISQMSGLIFLSLSNNNFNGSIPSELGNLSKLQAIELSFNSFDGKIPPSLGNLNSLLWLMLANNSLTGEIPRELGNCSSLIWLNLANNKLTGKFPYELTKIGRNAMETFESNHRNMVGVVAGNSECLSMRRWIPADYPPFSFVYSILTRKNCRSLWDRLLKGYGIFPMCASEPSTRSSHKFGYVQLSGNQISGEIPSEIGTMLNFSMLHLGDNKFSGKFPKEIGGLPLIVLNMTRNEFSGEIPREIGNMKCMQDLDLSWNNFSGTFPKSLVNLDELSRFNISYNPLLSGTVPPLGHLLTFDKDSYLGKAKVTDFGLARVVDVDDSHVSTIVAGTVGYVAPEYGQTWHATTKGDVYSFGVLIMELATGRRAVDGGEECLVEYVRRVMDNGRNGFSHFGLVGGAKEMFELLQVGVKCTNDSPQNRPNMKEVLAMLIKIFNFYRNSNY 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01777 587 SUPERFAMILY Protein kinase-like (PK-like) 449 580 IPR011009 -
Trre6g01777 587 Gene3D Ribonuclease Inhibitor 371 442 IPR032675 -
Trre6g01777 587 Gene3D Ribonuclease Inhibitor 2 91 IPR032675 -
Trre6g01777 587 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515
Trre6g01777 587 Pfam Leucine Rich repeat 123 138 IPR001611 GO:0005515
Trre6g01777 587 Gene3D Ribonuclease Inhibitor 201 369 IPR032675 -
Trre6g01777 587 Gene3D Ribonuclease Inhibitor 92 190 IPR032675 -
Trre6g01777 587 Gene3D - 252 318 - -
Trre6g01777 587 Gene3D Transferase(Phosphotransferase) domain 1 443 585 - -
Trre6g01777 587 Pfam Protein tyrosine and serine/threonine kinase 450 574 IPR001245 GO:0004672|GO:0006468
Trre6g01777 587 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 445 575 - -
Trre6g01777 587 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 91 - -
Trre6g01777 587 FunFam Putative LRR receptor-like serine/threonine-protein kinase 98 260 - -
Trre6g01777 587 ProSiteProfiles Protein kinase domain profile. 297 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01777 587 SMART serkin_6 339 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01777 587 SUPERFAMILY L domain-like 37 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01777 Trre-Chr6 14610863 14613340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01777 450 578 Receptor kinase-like Gene Family AT5G07180 33.824 2.62e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Trre6g01777 PK_Tyr_Ser-Thr 3.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01777 - - gmx:100813425 691.034