Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01771 ATGGGTTGTGTGAGTTCGAAGCAACAAACAGTGTCGGTGACGCCGGCGAATGAAAATTCAGGCGGTGCGTTAGAAAGGAAACTCAAAACTGAGTTAGAGAAAACGAGTCAGAATGGTGTTCGTGGTGAATCGTTGAGTTTCAGGTTAGGGAATTTGCACAAGTTTGTTCAAAGTGAACACGTGGCAGCTGGTTGGCCTGCTTGGCTTAGCGCCGTCGCTGGTGATGCTATTCACGGTTGGATTCCTCTTCGTCCTGATGCCTTTCAGAAACTCCAGAAGATTGGGCAGGGGACATATAGCAATGTATTTAAGGCAAAGGAGATTGAGACAGGAAAGATTGTGGCATTGAAGAAAGTGCGGTTCGACAATTTTGATCCAGAGAGTGTGAGGTTCATGGCAAGGGAGATAATGATATTGAGAAAGCTTGATCATCCCAATATCATGAAGCTTGAAGGGTTGATTACTTCCAGATCTTCTTGTACCTTATACCTTGTATTTGAGTACATGGAGCATGACATTATAGGACTCTTGGGCAATCCTGATATCAAGTTCAGTCAACCACAGATTAAGTGCTATATGAAGCAATTGTTATCTGCTGTTGAGTACTTTCACTCGCGAGGTGTGATGCATCGGGACATCAAAGGATCCAATCTTCTGGTGAATAATGAAGGAATATTGAAGGTGGCAGATTTTGGATTGGCGAACTTTGTTAGGTCTGGGAAAAAACATCCCCTCACTAGTCGTGTTGTCACATTATGGTATCGTCCACCGGAGCTTTTGCTTGGTTCGACCAATTATGATTCGTCTGTGGATCTTTGGAGTGTTGGCTGTGTCTTTGCAGAGTTACTTGTTAAGATTCCTATACTTCAGGGGAAAACTGAGGTAGAACAATTACACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATATTGGAAAAGGTCTGAACTTCCTCGTGCAACTTTGATATATGATGGTTGCTTCAAAGAGTACTTTAAAGATTTGCCTCCAACCAGTGTACATTTGCTACAAACTCTTCTGTCTGTTGAGCCTTACAAACGTGGGACTGCCTCATCTGCTCTCTCATCAGAGTATTTCAAAACACAACCTTATGCATGTGATCCATCAAGCTTGCCGAAATACCCGCCTAGCAAGGAAATTGACGCAAGACAAAGGGCGACAGAGGAGGCAAGGAAAAAGAATGGAAGAGTTCGTCGAACTGAAACAATGAAACGATCAAGAAAGCCACAGGACTTGGCAAATCAAACGCAAAATTCTCAAAAGGTCAAGAGTAGATCGTTCCGAATCCTTGAAGAAGAGAAGAGTAACTTTGTTTTGAAGGCACAAAAGCCATCCATTGATATACATGAGTATGCTTCCCATATGAAGAATGCATCTCAAGAAGATATTCCCTTTTCTGGACTATTACAAATTTCAAATTCAAGTGGCTTTGCTTGGGCAAAAAGCCGGAAAGACGACACTTCAATTCGATCACGTTGTCAATCTTTTTCTAAAGGACATAGTTTCAATGCGTTAGATTCTTCTGTATTAAACAGGAGGAATAATTTGGAAACAATTAATCATGATAATAAGGAGTTTTGTGAGAGAAATACCAACTCTAGACACTTTGAAAATTCTAAGGCTTCAAAGCAGAATCAGTGGAGTAGGTTCGGTCGTCTAGAGTCATTCGATGCTTCTGATGAGTACCACTCACAAGAATTGTCGGTGCTTTATCAGGGAGAAGATTCATTATCCAAAAGAAGTAATCTGAGTTACCAGGATCAAGCAGAAAAGATTGGCTTTTCAGGACCCCTACTGTTGAAAATGCACACGGTTGACGAACTCTTAGAAAGGAATGAGCGTCACATTCGGCGAACGGTCCGACGATCATGGTTTCATAGAGGTAAGAAGCATGGGAAGAGAATGTAG 1932 0.4193 MGCVSSKQQTVSVTPANENSGGALERKLKTELEKTSQNGVRGESLSFRLGNLHKFVQSEHVAAGWPAWLSAVAGDAIHGWIPLRPDAFQKLQKIGQGTYSNVFKAKEIETGKIVALKKVRFDNFDPESVRFMAREIMILRKLDHPNIMKLEGLITSRSSCTLYLVFEYMEHDIIGLLGNPDIKFSQPQIKCYMKQLLSAVEYFHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFVRSGKKHPLTSRVVTLWYRPPELLLGSTNYDSSVDLWSVGCVFAELLVKIPILQGKTEVEQLHKIFKLCGSPPDEYWKRSELPRATLIYDGCFKEYFKDLPPTSVHLLQTLLSVEPYKRGTASSALSSEYFKTQPYACDPSSLPKYPPSKEIDARQRATEEARKKNGRVRRTETMKRSRKPQDLANQTQNSQKVKSRSFRILEEEKSNFVLKAQKPSIDIHEYASHMKNASQEDIPFSGLLQISNSSGFAWAKSRKDDTSIRSRCQSFSKGHSFNALDSSVLNRRNNLETINHDNKEFCERNTNSRHFENSKASKQNQWSRFGRLESFDASDEYHSQELSVLYQGEDSLSKRSNLSYQDQAEKIGFSGPLLLKMHTVDELLERNERHIRRTVRRSWFHRGKKHGKRM 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01771 643 MobiDBLite consensus disorder prediction 375 432 - -
Trre6g01771 643 Pfam Protein kinase domain 88 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01771 643 MobiDBLite consensus disorder prediction 417 432 - -
Trre6g01771 643 Gene3D Phosphorylase Kinase; domain 1 76 170 - -
Trre6g01771 643 SMART serkin_6 88 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01771 643 PANTHER CELL DIVISION PROTEIN KINASE 86 371 - -
Trre6g01771 643 FunFam probable serine/threonine-protein kinase At1g54610 75 170 - -
Trre6g01771 643 Gene3D Transferase(Phosphotransferase) domain 1 171 407 - -
Trre6g01771 643 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Trre6g01771 643 CDD STKc_CDK9_like 88 367 - -
Trre6g01771 643 MobiDBLite consensus disorder prediction 1 19 - -
Trre6g01771 643 ProSiteProfiles Protein kinase domain profile. 88 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01771 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Trre6g01771 643 MobiDBLite consensus disorder prediction 386 404 - -
Trre6g01771 643 SUPERFAMILY Protein kinase-like (PK-like) 82 374 IPR011009 -
Trre6g01771 643 FunFam probable serine/threonine-protein kinase At1g54610 171 407 - -
Trre6g01771 643 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01771 Trre-Chr6 14547050 14552814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01771 86 401 Core Cell Cycle Gene Families AT5G10270 48.246 6.42e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre6g01771 Pkinase 4.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01771 - - gmx:100803328 938.332