Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01759 ATGGAGAGTGAGGGATTTGATTTGAATAGAGGAACAAGTGGTGGGAATAATGGTAAGATTGGTGATGATTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATACTGATTCAAATAGCTCTCAAGAGGTTTTTACACTTCTATTAAGATGCTGTTATCAGGTTATTTCAGTGAAATCAGCAAGACAAGTAATCGATGCACTGAATGCAGAGGGGGAACATATAGATCTCATACTAGCTGAAGTTGGTCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGGGACAAAGAATTGCGCAGAATTCCTGTTATAATGATGTCCGCGCAAGATGAGGTGTCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACAAACGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTTCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTCTCTGATGACACTGATGATAGGTCCAAAAGAAACACTATTCCAGAGACAGAAATATCAGTCCAACAAGAGCAAGAGTCTGCTATTGCAAATGCTGCTGCTGTCGAGGAACCTCCAGATGACCATGCATCAGAATGTCAGCTGGATGTCCATGGAATAAATGATCAGAGAATAGCACACTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATTGGGGTTGGTGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTTAAGGGAAACCTTGAAGGGATTGTTCATGTTGATAACAATGCTGCCGAACATTTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAGTAGTGACATCGAAATACGCGAAAATGGAGACACATGTGAAAGTCAATCGCAAGAAGACTTGCCTAGTAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCGCCTGCATCTACGGAAGCTTCACAGCGAAACCGTTACAACGAAGAAATTTTGCATCACAACAGTCTGAGGCATCCAAGAAATGAGACTCGTTCTGAGCTTGAAATATCTGGCATGACTGCACAACATGCATATCCATATTATATGCCAGGAGTTGTTAATCATGTTATGATGCCTTCATCGGCACAAATGTATCAAAAGAATGTCCAGGACTTGCAGAATCATGCGGCTACATCCATGATTGCCCACTACAATCATGTTCCACAAGTCGGTCCTCATGGCACTGGTATGATGTCCTACCCGTATTACCCATCAAACATGTGCTTACAACCCGGCCAGATTCCTTCAGGTCATTCATGGCCATCCTTCGGAGGCTCAAGTTCATCCGAATCAAAATTAAGTAAAGTTGATAGGAGAGAGGCAGCGTTGATTAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACCGGAAACAACTTGCTGAAAGACGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAATGGACAGCCTCCTTCCGTTGAATATGATCAAGATGGTGAAGAAGAAGATGACCTGGGAGCTTGA 1662 0.4212 MESEGFDLNRGTSGGNNGKIGDDFVDRSKVRILLCDTDSNSSQEVFTLLLRCCYQVISVKSARQVIDALNAEGEHIDLILAEVGLPKKKGMKMLKYIARDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLSEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRNTIPETEISVQQEQESAIANAAAVEEPPDDHASECQLDVHGINDQRIAHFSSGPKKSELRIGVGESSAFFTYVKASMLKGNLEGIVHVDNNAAEHLRMEVMHQACAQQGVSSDIEIRENGDTCESQSQEDLPSSNSIPDSLSIERSCTPPASTEASQRNRYNEEILHHNSLRHPRNETRSELEISGMTAQHAYPYYMPGVVNHVMMPSSAQMYQKNVQDLQNHAATSMIAHYNHVPQVGPHGTGMMSYPYYPSNMCLQPGQIPSGHSWPSFGGSSSSESKLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPPSVEYDQDGEEEDDLGA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01759 553 Pfam CCT motif 482 524 IPR010402 GO:0005515
Trre6g01759 553 MobiDBLite consensus disorder prediction 320 354 - -
Trre6g01759 553 MobiDBLite consensus disorder prediction 355 371 - -
Trre6g01759 553 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
Trre6g01759 553 MobiDBLite consensus disorder prediction 314 371 - -
Trre6g01759 553 Gene3D - 30 244 - -
Trre6g01759 553 MobiDBLite consensus disorder prediction 525 553 - -
Trre6g01759 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 314 IPR045279 GO:0009736
Trre6g01759 553 SUPERFAMILY CheY-like 26 155 IPR011006 -
Trre6g01759 553 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
Trre6g01759 553 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Trre6g01759 553 SMART REC_2 30 145 IPR001789 GO:0000160
Trre6g01759 553 MobiDBLite consensus disorder prediction 175 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01759 Trre-Chr6 14436870 14441588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01759 19 542 Response Regulator Gene Family AT5G61380 50.411 2.94e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre6g01759 Response_reg 1.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01759 K12127 - gmx:100799728 832.787