Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01749 ATGGAGCAAAGGAAGATAAGTGGACCATGGTCAAAACAAGAGGATGAAATATTAATTGAATATGTAAAAAGATTTGGATCGCAAAATTGGAATGCAGTACAAAGGTTAACTGGACTTCCTCGAGATGGTAGAAGTTGTCGTCTAAGATGGCTTAATCAACTTAATCCTATTTTGAAAAAGGGAAAATATAGTGAAGAAGAAAAACAGAAAATCATTCAACTTCGTCAACTTAATTGTTCATGGTCCAAAATTGCTGAACAGTTTCCTGGAAGAACAGATAATGAGGTAAAGAACATCTGGTATAGTAACGAGAGAAAGAAACATAAAATGGAGAACGTCAAAGAAGAAAGTCGGAAAAAGAAAAAGAAATTAAATCATTTGCCACTCAACAATGAAATCAAAAAATCACATGATAATGAGTTGAATGACAATGGAGAAAGTAGTCTTAGTGGTTTCATGAGCAACCAACAACAAGACATTTCTGGCACACATGAAAGGGAACTCATGAAAGACTCATTTCATATTCCAATTATGCAACCTTCAAATACGCTGCAATGCAATGTGGATAGTACTTCTATAAGCAAAAATTCTTCTCCAACATTTATTGATAGGGGTGAAGCTACTTTTATGCCAATTGGCATGCTATCAGATTTGCCTTCATTGCTAGAAATTGAATCTCCACTTCCTTCATACACCTCTGAAAGCAATATCTCTTCCCCAACATTTATTGAGAGGGGTGAATCTTCTTTTGCTTCTATGGACATGATATCAGGTCTAGCTTCACTTCCACTTCCAGAAAGTACAGATTTTCAATCTCTTGAATCTCCACTGATTTATAAGTATCCTCCACTTCCACTTCGATCACCCGAGGAGATTCGACAACAACAATTAGAACCAGATTCTCCATCCAATAATGGTTTTTTGGTTGTTGAAGAAAATGAGAATAAGCCAATATCTTTGGAGAAAGATGAATCAAAAAGTGAAGACTTAATAGATTTGTTGGATAGTTTAGGTTGGCTTGATGGTTACATTTTTTGA 1038 0.3526 MEQRKISGPWSKQEDEILIEYVKRFGSQNWNAVQRLTGLPRDGRSCRLRWLNQLNPILKKGKYSEEEKQKIIQLRQLNCSWSKIAEQFPGRTDNEVKNIWYSNERKKHKMENVKEESRKKKKKLNHLPLNNEIKKSHDNELNDNGESSLSGFMSNQQQDISGTHERELMKDSFHIPIMQPSNTLQCNVDSTSISKNSSPTFIDRGEATFMPIGMLSDLPSLLEIESPLPSYTSESNISSPTFIERGESSFASMDMISGLASLPLPESTDFQSLESPLIYKYPPLPLRSPEEIRQQQLEPDSPSNNGFLVVEENENKPISLEKDESKSEDLIDLLDSLGWLDGYIF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01749 345 CDD SANT 62 103 IPR001005 -
Trre6g01749 345 CDD SANT 9 52 IPR001005 -
Trre6g01749 345 Coils Coil 103 127 - -
Trre6g01749 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 108 IPR017930 -
Trre6g01749 345 MobiDBLite consensus disorder prediction 295 310 - -
Trre6g01749 345 ProSiteProfiles Myb-like domain profile. 55 104 IPR001005 -
Trre6g01749 345 Pfam Myb-like DNA-binding domain 10 70 - -
Trre6g01749 345 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
Trre6g01749 345 MobiDBLite consensus disorder prediction 295 325 - -
Trre6g01749 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 58 IPR017930 -
Trre6g01749 345 Gene3D - 7 58 - -
Trre6g01749 345 Gene3D - 59 109 - -
Trre6g01749 345 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 325 - -
Trre6g01749 345 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Trre6g01749 345 SMART sant 6 56 IPR001005 -
Trre6g01749 345 SMART sant 59 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01749 Trre-Chr6 14376667 14378956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01749 8 109 MYB Transcription Factor Family AT3G11440 51.456 3.11e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g01749 Myb_DNA-bind_6 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01749 K09422 - tpra:123888557 351.288