Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01738 ATGGCAACCGTTACTACACAGGCTTCGGCTGCCATTTTCCGGCCATGCGGTTTGAAATCGAGGTTTCTTGCCGGTTCTTCTGGTTATAAATTGAACAGAGAAGTGGCTTTTAGGCCAGTTAAGTGTTCACCTTCTGCTTCTTTTAAGGTTTTTGCCAAGAAAGGAGAGTGGTTGCCTGGCTTGGCCTCCCCGGGTTACCTCACTGGCAGTCTTCCTGGAGACAACGGTTTCGATCCATTGGGACTCGCCGAGGATCCAGAGAACTTGAAATGGTTTGTTCAAGCCGAGCTTGTAAACGGACGTTGGGCCATGTTAGGTGTTGCAGGGATGTTACTCCCTGAGGTCTTAACCAGCATTGGAATCATCAATGTTCCAAAATGGTATGATGCAGGGAAAGAAGAATACTTTGCTTCATCATCAACACTCTTTGTGATTGAGTTCATTTTGTTCCATTATGTTGAGATTAGAAGATGGCAAGACATTAAGAACCCTGGTAGTGTTAACCAAGATCCTATCTTTAAGCAATACAGTTTGCCAAAGGGTGAGGTTGGTTACCCTGGTGGAATTTTTAACCCTTTGAACTTTGCACCTACTTTGGAAGCTAAAGAGAAGGAAATTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATACTTCAGCACAATGTGACAGGAAAAGGACCATTTGATAACCTTGTGCAGCACATTTCAGACCCATGGCACAACACCATTGTTCAAACACTAAGTGGAGGAAACTAA 765 0.4418 MATVTTQASAAIFRPCGLKSRFLAGSSGYKLNREVAFRPVKCSPSASFKVFAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVLTSIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFILQHNVTGKGPFDNLVQHISDPWHNTIVQTLSGGN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01738 254 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 33 249 IPR001344 GO:0009765|GO:0016020
Trre6g01738 254 Gene3D Chlorophyll a/b binding protein domain 64 243 - -
Trre6g01738 254 SUPERFAMILY Chlorophyll a-b binding protein 53 250 - -
Trre6g01738 254 Pfam Chlorophyll A-B binding protein 64 223 IPR022796 -
Trre6g01738 254 FunFam Chlorophyll a-b binding protein, chloroplastic 64 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01738 Trre-Chr6 14280963 14282961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01738 39 251 Chloroplast and Mitochondria Gene Families AT3G61470 52.703 7.55e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01738 K08910 - pvy:116133502 464.536