Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01730 ATGGGTCGCAATTCACAACTTTGTTTGTCTTGTGTTCACAACTGTCGATTCTTTCACTCTCACCGAACAACCACAACTTCAACCTCCCCTAACTCTTTCTACAAGTTGATCGTTCGTCAAAATGATTTCAATCTTTTGTATCTTCCTCCAAAGTTGAATCATTTTATGTCAACCTTGCTTGATGAGAAAATCAATCTCGAGGATTCAGCGGGAGGGCGAACGGTTGTTACAATATCAAAAGATGACGGTTCTTTTGCTTTTAAGGAAGGATGGGAGGTTTTCTCAAAGGAGCATGGGCTTGAAATTGGAGATATTGTGGTATTCAATTGCATTAACAAGTTGAATTTTGATGTCAAGATCTATGATGAATCTGTGTGTGAAAGACTAGATTTTTCTAAAAAAAGAAATGGGAGAAAGAGAGATAGAAGTGGTACGTTTGTTAGACAAAATCGTATAGAAAATATTTCAGAAAATGATTATGAGGATCGAAGGGTTCAATCTAAGTGTACATCAGAACACATCGAAGACACATGTTACATAACAAGCCATATGTATCAAAATGATGATGTAGATGTTTTTAACAAAGATCCTATGTTTGAAGAAGTGTTGGGTACAGGGGATACCTCATATGCATCTAAACTATTATTGTTAGGGAGAAACAGTTCTCTTGGCGAGACAGACAAAAGCACATGTGACGATAGTCTTGCTTTGATACATGGACAAAATAAAAAGCACAAATCCATTATGTTCAATACCCAAGCTCAAGAGTGCCAATTTGTTGAGAGCTTAGGTGAATTTAATGAAGTGGCTGCTAACATGACTCCCAAAATGTGCAGTTTCACTGATAAATTGCATACAACAGAGTTGCCAAAGGTTATTAAGGGAGAGTTTAATCAAGATAATGAGAGTCACTTTGAAACTTCTGGAGGAAACAATTCTGTTGGTGATTCAGGCAAACATGCCTCACATGCATCTGAACTTGAAACTTCTGGCAGAAACAATTCTGTCGGTGATTCAGGCAAAAGCGCATATGCCAAGAATTCTACTATGAAACTTGAAGAAAACAAAGAGGGAAAATCCATCAAGTCCGAAAAGGAAATTCAAGAGTGCCTGTTTGCTGAAGGCTTAGAGTTGCCAAAGGTTATTAAGGGAGAGTTTAATCAAGATAATGACATGCACTTTGAAACTGTTGCCACCGTCTCCTCTGTGGTGCTCACTGATAATGACCGTCTTAATGCCAAACCGCAATCCAATGATATCTCCAATCTCTTAAATGATCAAATTCACTTTGCTGAAATGAAGGAAGTGCCTATGGAAATGACTCCCAAATTGGGCAGTTTCAATGACAAATTTAATGCAACAGGGTCGCCAGAGTTTAATGAAGATGAAACTGCGGAAACTGTCACCTGTGTAGTGCTCACTGATAATGATTATTTGAAATTGTCAACATGCTTATGCTTATCTCGAACTGGACTAGGAACGAAGAGGATGGTGGTGTTCCTTAGGGATCCACTGGGGAGATTGTGGCCGGTTCTTTGCCTTGAAAAAACTTGGTTGACAAGTGGATGGTTAGATTTTCAAAGAGCAAATAATATTAAACCAGGTGATGTGTGCGTTTTTCGGGTTGTGAACAAGTTTGAAGGTATAATATCTGTACATATAAACCACAAGTGA 1674 0.3829 MGRNSQLCLSCVHNCRFFHSHRTTTTSTSPNSFYKLIVRQNDFNLLYLPPKLNHFMSTLLDEKINLEDSAGGRTVVTISKDDGSFAFKEGWEVFSKEHGLEIGDIVVFNCINKLNFDVKIYDESVCERLDFSKKRNGRKRDRSGTFVRQNRIENISENDYEDRRVQSKCTSEHIEDTCYITSHMYQNDDVDVFNKDPMFEEVLGTGDTSYASKLLLLGRNSSLGETDKSTCDDSLALIHGQNKKHKSIMFNTQAQECQFVESLGEFNEVAANMTPKMCSFTDKLHTTELPKVIKGEFNQDNESHFETSGGNNSVGDSGKHASHASELETSGRNNSVGDSGKSAYAKNSTMKLEENKEGKSIKSEKEIQECLFAEGLELPKVIKGEFNQDNDMHFETVATVSSVVLTDNDRLNAKPQSNDISNLLNDQIHFAEMKEVPMEMTPKLGSFNDKFNATGSPEFNEDETAETVTCVVLTDNDYLKLSTCLCLSRTGLGTKRMVVFLRDPLGRLWPVLCLEKTWLTSGWLDFQRANNIKPGDVCVFRVVNKFEGIISVHINHK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01730 557 SUPERFAMILY DNA-binding pseudobarrel domain 485 553 IPR015300 -
Trre6g01730 557 Gene3D - 458 557 IPR015300 -
Trre6g01730 557 Gene3D - 24 126 IPR015300 -
Trre6g01730 557 PANTHER B3 DOMAIN-CONTAINING 27 545 - -
Trre6g01730 557 MobiDBLite consensus disorder prediction 301 360 - -
Trre6g01730 557 Pfam B3 DNA binding domain 495 547 IPR003340 GO:0003677
Trre6g01730 557 Pfam B3 DNA binding domain 44 122 IPR003340 GO:0003677
Trre6g01730 557 MobiDBLite consensus disorder prediction 302 319 - -
Trre6g01730 557 MobiDBLite consensus disorder prediction 327 349 - -
Trre6g01730 557 CDD B3_DNA 472 541 IPR003340 GO:0003677
Trre6g01730 557 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Trre6g01730 557 SUPERFAMILY DNA-binding pseudobarrel domain 29 126 IPR015300 -
Trre6g01730 557 SMART B3_2 467 556 IPR003340 GO:0003677
Trre6g01730 557 SMART B3_2 33 124 IPR003340 GO:0003677
Trre6g01730 557 CDD B3_DNA 46 122 IPR003340 GO:0003677
Trre6g01730 557 ProSiteProfiles B3 DNA-binding domain profile. 499 557 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01730 Trre-Chr6 14164582 14168376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01730 20 127 B3 DNA Binding Superfamily AT4G01580 27.027 1.51e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g01730 B3 2.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01730 - - psat:127084256 508.449