Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01722 ATGAAGAAGAGACAAGTTGTGGCTAAAACTTCATCTTCAATTACAAGAAATATTAGATATGGAGAGTGCCAAAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGTAGAGAATTCATGGCTAGCAATGGAGAAGGAACAAGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGAACTTTCATAGAAAAGAAGTGCAAACTGAAGTTGTTTATGATTATGATAAATTCAAAAGGATGCTAACCACGTATTCTTTCTATATTGGCATTACTTCAAAGGCAAGAAAACAGAGTCCACTTGTGTTCAATCATATCAAGGATATGTCTTAA 342 0.3626 MKKRQVVAKTSSSITRNIRYGECQKNHAANIGGYAVDGCREFMASNGEGTSGALTCAACGCHRNFHRKEVQTEVVYDYDKFKRMLTTYSFYIGITSKARKQSPLVFNHIKDMS 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01722 113 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 84 - -
Trre6g01722 113 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Trre6g01722 113 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Trre6g01722 113 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01722 Trre-Chr6 14057985 14060125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01722 1 77 Zinc finger-homeobox gene family AT3G28917 62.637 2.24e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre6g01722 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01722 - - mtr:11409341 158.303