Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01718 ATGCCTTTTTTCCTCTCTTTCGTGCGATGCGATTCCTCTCCACAATCATCTCCGGTCTCCGCCTCACCAACGGCGCCACCACATCCAATCTTAACCACTTCCTCACTGCTCCATGGTTTGAAGAAGATAGAGAAAGAGCGTGTTACAGATCTGAACGGAATAGAGGTTAGAGTTGGGAATCCCATTGAAAATCAAGGGTGTGCCTACGAGGTTCTTAAACTATATAACTCTCATAAAGGAACAGGAAAAGCTACTATTCAAAGGCCTACTGCTGGACCTCTTAGGCCCAATTGTTCATATGATGGACAGACTCAGAAATACAACATGAAGCTTAGGGCTGGTAAAGGAGTTTCTCTTGAGGAGTTGAAGTCAACTAGTTATGCAGGGGAGCCTAATATTTTAATGCAAGAGGATATCTAG 420 0.4405 MPFFLSFVRCDSSPQSSPVSASPTAPPHPILTTSSLLHGLKKIEKERVTDLNGIEVRVGNPIENQGCAYEVLKLYNSHKGTGKATIQRPTAGPLRPNCSYDGQTQKYNMKLRAGKGVSLEELKSTSYAGEPNILMQEDI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01718 139 Pfam Ribosomal protein L13e 83 125 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01718 Trre-Chr6 14013854 14020079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01718 88 134 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 63.830 5.33e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01718 K02873 - twl:119980670 56.6102