Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01710 ATGGTTCACGTCTCGTTTTACCGCAACTATGGTAAAACGTTTAAGAAACCTCGTCGTCCATACGAAAAAGAACGATTAGATGCTGAATTGAAACTCGTCGGAGAGTATGGACTAAGGTGTAAACGCGAATTATGGAGAGTACAGTATGTTCTGAGTCGAATTCGAAACAATGCTAGAAATCTTCTTACTCTTGATGAGAAGAATCCAAGAAGGATTTTTGAAGGTGAAGCATTGCTTCGAAGAATGTTTCGTTATGGATTACTCGATGAAACTCAGAATAAGCTTGATTATGTTCTTGCTCTTACTGTTGAGAATTTTCTAGAACTTCGTCTTCAGACTCTTGTTTTTAAATCTGGTATGGCTTGTTGGTGCACAAAGATGATAAATGAATAG 393 0.374 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLELRLQTLVFKSGMACWCTKMINE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01710 130 SUPERFAMILY Alpha-L RNA-binding motif 12 121 - -
Trre6g01710 130 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Trre6g01710 130 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 121 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre6g01710 130 NCBIfam 30S ribosomal protein S4 11 121 IPR005710 GO:0003735|GO:0006412|GO:0015935
Trre6g01710 130 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01710 Trre-Chr6 13948447 13948927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01710 1 121 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 93.388 2.89e-78 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01710 K02997 - gmx:100790098 240.736