Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01709 ATGGCTAAGTCTATTCATCATGCTAGGGTTCTCATCAGACAGAAGCATATCAGGGTTGGAAGGCAGGTTGTGAACATCCCCTCTTTCTTGGTGAGGGTTGACTCACAGAAGCATATCGACTTTTCACTCACAAGTCCATTTGGTGGTGGACGTGCCGGAAGAGTGAAGCGAAAGAACCTAAATGCTGCTGCCAAGAAGGCTTCTGGTGAAGGCTATGAGGAGGATGAGGATTAA 234 0.4744 MAKSIHHARVLIRQKHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPFGGGRAGRVKRKNLNAAAKKASGEGYEEDED 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01709 77 CDD S4 1 34 - -
Trre6g01709 77 Pfam S4 domain 1 33 IPR002942 GO:0003723
Trre6g01709 77 SUPERFAMILY Alpha-L RNA-binding motif 1 47 - -
Trre6g01709 77 ProSiteProfiles S4 RNA-binding domain profile. 2 61 - -
Trre6g01709 77 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 64 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre6g01709 77 Gene3D - 1 68 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01709 Trre-Chr6 13942352 13943778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01709 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 85.294 4.21e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01709 K02997 - egr:104425972 129.028