Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01707 ATGGATTCTCTCAAAATTTTCAAAGGATATGACAAAGTTGAAGACAACCTCGAAGATCCACAAAAACAACAGCACCGACACAAAATCTCCAAACACCTCATTGCCACAATTTCAATCATCATCGTCATCCTCTTCCTTACCTTCACTCTATCTTTCACCCTTTTTTATCACACCAACTCAACCGAGTCACAAACTCCTCTCAACTCAACCGAGTCAATCCGATCCGTTTGCAACGTAACTCGCTTCCCTGACTCATGTTTCACCGCCATATCCTCCTCCACACAAAACCCCACCGACCCAAAAACCATTCTCAAAATCTCAATCCTCGCATCCATTAAGGAACTCAACAAATTCGCTTCATCGCTAAAAGCCAACTCCAATGGACACGCGCTCGGTGATTGTAATGAAATGATTGATGAGGCAACGTGGGTTAGTGCCGCGTTGACGGATCAACAAACGTGTGTTGATGGGTTAGAAGAAGTTGGGTTTTCGGTGAATAGTGTTGAAAAGGTAAAGAAAATTATGCAAAGATCAAATGAGTATATTAGCAACAGTTTGGCTATTGTTGCTAATATACGCAATTTGTTACATTGA 594 0.4158 MDSLKIFKGYDKVEDNLEDPQKQQHRHKISKHLIATISIIIVILFLTFTLSFTLFYHTNSTESQTPLNSTESIRSVCNVTRFPDSCFTAISSSTQNPTDPKTILKISILASIKELNKFASSLKANSNGHALGDCNEMIDEATWVSAALTDQQTCVDGLEEVGFSVNSVEKVKKIMQRSNEYISNSLAIVANIRNLLH 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01707 197 PANTHER PECTINESTERASE INHIBITOR-LIKE 41 187 - -
Trre6g01707 197 SMART PMEI_2 68 188 IPR006501 GO:0004857
Trre6g01707 197 CDD PMEI-like_3 75 192 - -
Trre6g01707 197 Gene3D Invertase/pectin methylesterase inhibitor family protein 141 194 IPR035513 -
Trre6g01707 197 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 140 IPR035513 -
Trre6g01707 197 Pfam Plant invertase/pectin methylesterase inhibitor 72 188 IPR006501 GO:0004857
Trre6g01707 197 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 192 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01707 Trre-Chr6 13933282 13933956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01707 1 196 Carbohydrate Esterase AT1G53840 30.738 9.84e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01707 - - gmx:100789567 170.629