Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01706 ATGTCTAGTAGAAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACTGATGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATCGGAGCTCTGACAAGGTTTCAGCTTCAAGGACATTGCAGGAGACTTGCAACTATATTAGAAACTTGCATAGAGAAGTGGACGATCTAAGTGAGCGTTTGTCTGAGCTATTGGCTACAACAGACACAGCACAAGCAGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4158 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRTLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01706 92 FunFam Transcription factor ILI6 7 87 - -
Trre6g01706 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Trre6g01706 92 Gene3D - 18 88 IPR036638 GO:0046983
Trre6g01706 92 CDD bHLH_AtPRE_like 17 77 - -
Trre6g01706 92 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g01706 92 Coils Coil 57 77 - -
Trre6g01706 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Trre6g01706 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Trre6g01706 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01706 Trre-Chr6 13916978 13918449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01706 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 4.12e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g01706 HLH 3.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01706 - - gmx:100527636 153.295