Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01695 ATGTCAAGGAGAGCTACATACTGGTGTCATACATGCAGACAGCCAATCCTGCTTGCAGGAAGGGATGCCCTTTGCCCTTACTGCGACGGAGGATTCGTGCAAGAAATTAACGAGTTGCGAGGACTTGCATCGTCATCACAGATGGAAGAGTTTCAGGATGATTCTGATATTTTCGACGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAGTTGGGTTTAGAGATGCTGTCGATAGTTACATGAGGCAAAGAATGGATGGTAGAAACACAAACTTTGATGCCAGAAGAAGATCTGTGTCCGGTTCCGTTCCAATTCCTGAACAAACTTGGGGTGTTTTTAGTTCTGCCGGTCGTTACTTAATATTTCATGACCAAACACCTAACTCAAGAGGCGATCCTAGGCGCGTTGATTTTGCCGATTACTTTATGGATCCTGGACTCAATGAACTTATCGAACAACTCAATACGAACGGTCGTGGTCCAGCCCCGGCTTCACAATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTTCACTCTGATTCACACTGTCCAATTTGTATAGAAAGATTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATTTACCACTCGGACTGCATCGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCGCCTCATGGATGTGGTAGTTCTCGTGGAAGGAATGGCAATAATACTGGTCAAAACAGTAATGGCCGAGGAAGGAGAAATCCATTGTCGTTTTTGTGGCCATTTCGTTCTTCCAGTTCAAATACTAATCACTGA 840 0.4417 MSRRATYWCHTCRQPILLAGRDALCPYCDGGFVQEINELRGLASSSQMEEFQDDSDIFDAIHAVVSQRGSVPRVGFRDAVDSYMRQRMDGRNTNFDARRRSVSGSVPIPEQTWGVFSSAGRYLIFHDQTPNSRGDPRRVDFADYFMDPGLNELIEQLNTNGRGPAPASQSSIEAMPTIKITQAHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGCGSSRGRNGNNTGQNSNGRGRRNPLSFLWPFRSSSSNTNH 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01695 279 Pfam Ring finger domain 190 232 IPR001841 -
Trre6g01695 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Trre6g01695 279 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Trre6g01695 279 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Trre6g01695 279 MobiDBLite consensus disorder prediction 241 279 - -
Trre6g01695 279 SUPERFAMILY RING/U-box 171 237 - -
Trre6g01695 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 236 - -
Trre6g01695 279 SMART ring_2 191 231 IPR001841 -
Trre6g01695 279 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Trre6g01695 279 MobiDBLite consensus disorder prediction 243 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01695 Trre-Chr6 13847348 13848187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01695 163 271 C3H Transcription Factor Family AT1G68180 43.119 9.83e-25 97.4