Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01691 ATGGAAAAAGATTCTGAGAAACCCTACAAAGAGACTGAAAAGAAGATCAGCGATGAAGATGATGATGATAATGATGATGCTAAGATGATGATGAAGAAGCAAGAAGCTAAATCAACACACAAGTGCAATATTTGTGGCAAGAGTTTTAACAATGGAAAAGCATTAGGTGGTCATAGAAGATCTCACTTTCTTAAGAAAAAACCTAATCATGATCATCGTCATCAATCACCAGAGCTGAAAACCCCTAGTAAGAGTACTAGGGTTAGTTGTTTCAATGATGATGAAGATATTAGGATTTGTTATATTTGCAATAAGAAGTTTCCAACAAAGAATGCCTTGTATGGTCACATGAGATCTCATCCTGGTAGGGTTTGTAAAGGAGTAAGTCCTCCTTCAAATTATCATATTCAAAATTCTTCTTCTTCGAACAATTCTAATAAAAAAGAAGATCAAGATAATGATGTTGATGATGATGATGATGGTAATTTTTCTTTACCAAGATGGAAAAAGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGTTGAGGCTGCGAAAAACCTATTGCATCTTCGTCACAACTGTGAGGTTTCGGGTTTGAACTCAAAGAGATCTGACTTTCCACTTCCGATTAAAAAAAGGGATTTTTTTGTTGGTGGGTCATCATCAAATGGGAACGGTAAAAAGGAGTTTGTGGTGAACAAGATTAAATTTGTTTTTAGTGGTTCATTGAAGATTGAAAACAAAAGTGATTGGAATGGTGATGATGATGATGATGATCATGATGATCAGGATGAGAGTGACAATATTAGTAATAAGAAACTAAAGACAAGTGAAGGTTTATGTGAATCTAGGGTTGATGAGAAACCGAGTAATCATTCTGAAGAGCAAAAAACTTTCAACTTTGATTTGAATGAGCCATATGTTATGGAGGATTAA 939 0.344 MEKDSEKPYKETEKKISDEDDDDNDDAKMMMKKQEAKSTHKCNICGKSFNNGKALGGHRRSHFLKKKPNHDHRHQSPELKTPSKSTRVSCFNDDEDIRICYICNKKFPTKNALYGHMRSHPGRVCKGVSPPSNYHIQNSSSSNNSNKKEDQDNDVDDDDDGNFSLPRWKKRDKRGRKCIGSVEAAKNLLHLRHNCEVSGLNSKRSDFPLPIKKRDFFVGGSSSNGNGKKEFVVNKIKFVFSGSLKIENKSDWNGDDDDDDHDDQDESDNISNKKLKTSEGLCESRVDEKPSNHSEEQKTFNFDLNEPYVMED 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01691 312 SMART c2h2final6 98 120 IPR013087 -
Trre6g01691 312 SMART c2h2final6 40 62 IPR013087 -
Trre6g01691 312 MobiDBLite consensus disorder prediction 1 17 - -
Trre6g01691 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Trre6g01691 312 MobiDBLite consensus disorder prediction 249 312 - -
Trre6g01691 312 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 311 IPR044653 GO:0003700
Trre6g01691 312 MobiDBLite consensus disorder prediction 63 87 - -
Trre6g01691 312 MobiDBLite consensus disorder prediction 266 300 - -
Trre6g01691 312 MobiDBLite consensus disorder prediction 131 146 - -
Trre6g01691 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 122 IPR013087 -
Trre6g01691 312 Gene3D Classic Zinc Finger 11 123 - -
Trre6g01691 312 MobiDBLite consensus disorder prediction 1 38 - -
Trre6g01691 312 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Trre6g01691 312 MobiDBLite consensus disorder prediction 124 168 - -
Trre6g01691 312 SUPERFAMILY beta-beta-alpha zinc fingers 39 120 IPR036236 -
Trre6g01691 312 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Trre6g01691 312 Pfam C2H2-type zinc finger 40 62 - -
Trre6g01691 312 Pfam C2H2-type zinc finger 99 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01691 Trre-Chr6 13826277 13827215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01691 35 131 C2H2 Transcription Factor Family AT2G26940 33.028 7.07e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g01691 zf-C2H2_6 2.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01691 - - tpra:123915298 402.134