Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01684 ATGTCAGCCATCGAGAAACTCAACGTGGTTGATTCGCCTGCATCCGGTTCCCGGAGTGTTGATTGTTTTGAGAAATTGCAACAAATCGGCGAAGGAACCCACGGTCAGGTTTACATGGCTCGAGAAATCAAAACTGGTGAAATTGTTGCTCTCAAGAAAATACGAATGGACAATAAGAGAGAAGGGTTTCCTATGACTGCAATACGTGAAATCAAAATTTTAAACAAACTACACCATGAAAATGTTATCAAGTTGAAAGAGATTGTCACGTCTCCAGTTCGCGAGACAGATGATCAAGGGAGGCCAGGCAAGTTATCCATGTTCACTTTATTACTTGCCTTTGGATTATAA 351 0.4131 MSAIEKLNVVDSPASGSRSVDCFEKLQQIGEGTHGQVYMAREIKTGEIVALKKIRMDNKREGFPMTAIREIKILNKLHHENVIKLKEIVTSPVRETDDQGRPGKLSMFTLLLAFGL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01684 116 SUPERFAMILY Protein kinase-like (PK-like) 18 94 IPR011009 -
Trre6g01684 116 PANTHER CELL DIVISION PROTEIN KINASE 21 104 - -
Trre6g01684 116 Gene3D Phosphorylase Kinase; domain 1 10 111 - -
Trre6g01684 116 FunFam Cyclin-dependent kinase C-2 10 112 - -
Trre6g01684 116 ProSiteProfiles Protein kinase domain profile. 23 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01684 116 Pfam Protein kinase domain 23 91 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01684 116 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01684 Trre-Chr6 13794308 13795045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01684 1 102 Core Cell Cycle Gene Families AT5G10270 77.670 4.14e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre6g01684 Pkinase 3.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01684 K08819 - csin:114306676 172.555