Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01683 ATGAGATTTACCATCCCCCAGATTAAGTGTTACATGAGGCAGCTTTTGACCGGACTGCACTATTGTCATGTCAATCAAGTTCTTCATCGTGATATCAAAGGCTCAAATCTTCTCATAGATAATGAAGGGAATCTGAAGCTGGCAGATTTTGGACTGGCACGGTCATTTTCAAATGAGCACAACGCAAACCTTACAAACCGAGTCATCACATTATGGTACAGACCCCCTGAATTATTACTGGGAGCAACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTTGGTTGCATTTTCGCTGAGCTTCTTCACGGGAAGCCCATCTTTCCTGGAAAAGACGAGCCAGAGCAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAAATGAGGCGAACTGGCCCGGAGTTCAAAACACTCCTTTGTACAATCAGTTTAAGCCGACAAGACCGATGAAAAGGCGTCTGAGGAAAGTTTTCGGACTTTTTGATCCCAATGCATTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCTGCTCAGAGAATTCTTGCCAAAGACGCACTTGATGCTGAGTACTTCTGGACTGATCCATTACCATGTGATCCCAAGAGGCTGCCATACATGAGAACTAGCTGTTTCAATTGTAAGATGAAGAATGAAAATATCAACTTGCTTAGTTCTACTTGGAAAAGACGGATTTTGTGTCTCAATTGCTTGATGAAATCCACTACAACAAACATGCACACACAGAGAAAATAG 756 0.4299 MRFTIPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGATRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPNEANWPGVQNTPLYNQFKPTRPMKRRLRKVFGLFDPNALELLEKMLTLDPAQRILAKDALDAEYFWTDPLPCDPKRLPYMRTSCFNCKMKNENINLLSSTWKRRILCLNCLMKSTTTNMHTQRK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01683 251 FunFam Cyclin-dependent kinase C-2 1 230 - -
Trre6g01683 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 27 39 IPR008271 GO:0004672|GO:0006468
Trre6g01683 251 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01683 251 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01683 251 Pfam Protein kinase domain 3 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01683 251 PANTHER CELL DIVISION PROTEIN KINASE 5 198 - -
Trre6g01683 251 SUPERFAMILY Protein kinase-like (PK-like) 3 200 IPR011009 -
Trre6g01683 251 Gene3D Transferase(Phosphotransferase) domain 1 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01683 Trre-Chr6 13791255 13794166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01683 1 233 Core Cell Cycle Gene Families AT5G64960 73.932 8.89e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre6g01683 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01683 K08819 - gmx:100793565 403.29