Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01682 ATGGGAAGTTCTTGTACAAAACCAGTTGCTCATGTTTCTTCATCAAACATTTCTGGAAGTAAGAAGCCAGAAAGCACAGCAAAGCGGTATTCAAATTCTTCCGATCAAAGAGCTTCTTTCCAAAATTCACAAGAAAATGTGGATCATTCGATCTCCAATAAACTTAAGTCCTTCAGCTTGAATGATATGAAGGAGGCTACTAAGAACTTCCGCCGAGAAAATATAATCGGAGAGGGAGGGTTTGGGCGTATCTTCAAGGGATGGATTGATGGAAACACATTTGCTCCCACAAAACCAGGGAGTGGAATTGTAGTGGCCATTAAGAATCTCAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTGGCAGAAGTAAATTATCTAGGGCAGCTTCACCATGAAAATCTGGTGAAACTCATCGGTTATTGCTTACAAGGAAAAAACAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAAAATCATTTATTTAGAAAAAATGTTCAACCTATTCCCTGGCCTACACGTGTCAATATTGCCGTTGGTATTGCAAAAGGATTAACATTCTTACATTCCTTGAATGCAAATGTTATCTTTCGTGATTTAAAGGCGTCTAATATCCTACTTGATTCAGATTTCAATGCAAAGCTTTCGGATTTCGGATTGGCAAGAGATGGTCCTACCGGAGATAATACTCATGTTTCAACTAGAATCATCGGAACTCAAGGTTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATATAGCTTTGGCGTTGTCTTGTTGGAATTACTAACAGGAAAGCGTGCGGTAGAAGACGCAAGACCTGGACTTTCTGAAGAAACTCTTGTAGATTGGGCAATGCCTTTCTTGAGTGATAGCAGAAGAGTTTTGAGAATCATGGACACAAGATTAGGTGGTCAATACTCTAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTAAACACAGATCCTAAATTTAGACCACCTATGACAGAAGTTCTTGTAACATTGGAAGGACTTCAATCATCAAATGCGTGCCAAAGAACACCAAAATATGGAAATGAGAATCCTGCAACCAAACATTCTTCTCATTCCCTAAGGTGA 1146 0.4023 MGSSCTKPVAHVSSSNISGSKKPESTAKRYSNSSDQRASFQNSQENVDHSISNKLKSFSLNDMKEATKNFRRENIIGEGGFGRIFKGWIDGNTFAPTKPGSGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIPWPTRVNIAVGIAKGLTFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRAVEDARPGLSEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMTEVLVTLEGLQSSNACQRTPKYGNENPATKHSSHSLR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01682 381 CDD STKc_IRAK 76 354 - -
Trre6g01682 381 MobiDBLite consensus disorder prediction 1 48 - -
Trre6g01682 381 MobiDBLite consensus disorder prediction 359 381 - -
Trre6g01682 381 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Trre6g01682 381 Gene3D Phosphorylase Kinase; domain 1 27 155 - -
Trre6g01682 381 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01682 381 PANTHER OS01G0588500 PROTEIN-RELATED 34 355 - -
Trre6g01682 381 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
Trre6g01682 381 Gene3D Transferase(Phosphotransferase) domain 1 156 375 - -
Trre6g01682 381 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01682 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Trre6g01682 381 SUPERFAMILY Protein kinase-like (PK-like) 44 358 IPR011009 -
Trre6g01682 381 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01682 Trre-Chr6 13787209 13790590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01682 41 351 Glycoside Hydrolase AT3G07070 49.051 2.63e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre6g01682 PK_Tyr_Ser-Thr 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01682 - - gmx:100800654 601.668