Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01670 ATGAATACTGCGTTTGACATGCTTGGTTCTGTGAGTCCTGGCCGAGTTTCTTGGCGATTTAAGGTTCGTGTTCTTAGGTTATGGACTGTGTCGACCTTTATGAAACCTGATCAAGCTAACTCAATTGAGATGGTTCTTATTGATGAGAAGGGTGCTAAGATCCATGCCTCTGTTCGTCGTCAACTCATGTATGTGTTTGATTCAAAAATTGCTGAAGGGAAAGTTTATAAGATGTCCTATTTCACTGTTGTGCCAGAATCTGGTTTGTTTCGTTCCACTCAACATCCTTATAAGTTGAAGTTCGAGATGAAAACTAAAGTTCAGATCTGTGGAAATAATTCAATTGATACCTATGGGTTATCACTCAGCACTATTGGTGATATATTTGCCTATGGACCTGAACATGATTTTCTAATTGATGTTGCTGCTGTGATTACTGGTGTTTCTGGTGAAAGGGAGTACATTCGAGATGGAAAAGTTGTGAAGATGGTTCTGCTCGAGTTGACTGATAATAGTGGAAAGTGTGAATGCGCATTTTTCGGTGATTACGTTGATATTCTTCAAGGGATGCTGGTGAAGGCTGGTGTTGGTCTTCCAATAGTTGTGGTTCAATTTGCTAAAATCAAGATTTTTTCAGGGAAAGTATCAATTCAAAATGTTGTCAATGCTACAAGGATTTTTGTTAATCCTCCAATACCTGAGATTGTCTCTTTGAGAAAAAATTTGGCTGTTGATGGTCTTGAATCTGCTGCATCTATTCCTGTACTTGGGCCTAGAGTTACCACATCCTTTGAGGATGATTTTTTGCTCATGTTTCCTAAGACTACCCTAGCTAACTTGGTTGGACTCGCTGAGGATGGTATTTATGTGGTTAGCGCTTCTGTGGTTGATTTGGTTGATCCTGAGGAGTGGTGGTATCCAGGTTGTAGGTGTCATAGAAGTCTTACTGCTGACTCTGGGGCTTATTACTGCAAGTATTGTGTGAAACATGTTTTCAAAATGGTCCCAAGGTTTAGGGTCAAACTCAGAGTTGATGATGGAACATCTGAAGCTGTTTTTGTTGTTTTTGATGCTGATATGCATGTTATGGTTGGCAAGCATTGCTTTGAAATGGTTCTTGATTCTAAGGCTGAAGATGCCGGCTTTTATCCCCCTGAATTTGATTTGCTAAAAGGGAAGACGTTTTTGTTCAAAGTTCAGAAAAGTTATTCAGGAGCATTAAGGTTTGATGATTCATATAGAGTGAAAAGGGTATGCAGTGATGAGGGTATTATCAAAGCTTTTGAAAGTTCTGTGGGTGAGAGTGGTTACGATGGTGATAATGATGTCAGTGGCGAGGAAGAGTCGGTTGAAAATACTCATTCTGAGGATTTTGCTGGTGATGTGGCTGTCACACCAAATTTGGCTAAAGTTGATGATGAAGTTTGTGCTGATGAGGAAATTGTTGTTTCTACTGCTCAGTTTGTCGAGGAAGTGATCGATTTGGGTGATGACTCTGATAAGGATTTGGGTATATTTCTTCCTGTGCGTGTTGGTTTGGACCCCATCAAAGCCTTCTCTGCCAAAAGGAATTTGTCTGCTGCCTTTGCTGAGTGTGATGACACTGAAGAGAGTTCTTCTCAGATTCGTAAACCTTCTCAAGGCTGA 1647 0.4038 MNTAFDMLGSVSPGRVSWRFKVRVLRLWTVSTFMKPDQANSIEMVLIDEKGAKIHASVRRQLMYVFDSKIAEGKVYKMSYFTVVPESGLFRSTQHPYKLKFEMKTKVQICGNNSIDTYGLSLSTIGDIFAYGPEHDFLIDVAAVITGVSGEREYIRDGKVVKMVLLELTDNSGKCECAFFGDYVDILQGMLVKAGVGLPIVVVQFAKIKIFSGKVSIQNVVNATRIFVNPPIPEIVSLRKNLAVDGLESAASIPVLGPRVTTSFEDDFLLMFPKTTLANLVGLAEDGIYVVSASVVDLVDPEEWWYPGCRCHRSLTADSGAYYCKYCVKHVFKMVPRFRVKLRVDDGTSEAVFVVFDADMHVMVGKHCFEMVLDSKAEDAGFYPPEFDLLKGKTFLFKVQKSYSGALRFDDSYRVKRVCSDEGIIKAFESSVGESGYDGDNDVSGEEESVENTHSEDFAGDVAVTPNLAKVDDEVCADEEIVVSTAQFVEEVIDLGDDSDKDLGIFLPVRVGLDPIKAFSAKRNLSAAFAECDDTEESSSQIRKPSQG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01670 548 Gene3D - 273 420 IPR012340 -
Trre6g01670 548 Gene3D - 114 249 IPR012340 -
Trre6g01670 548 CDD RPA1_DBD_A_like 21 107 - -
Trre6g01670 548 PANTHER OS03G0429900 PROTEIN 291 405 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g01670 548 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Trre6g01670 548 MobiDBLite consensus disorder prediction 434 454 - -
Trre6g01670 548 Pfam Replication factor-A C terminal domain 292 401 IPR013955 -
Trre6g01670 548 Gene3D - 5 110 IPR012340 -
Trre6g01670 548 SUPERFAMILY Nucleic acid-binding proteins 282 404 IPR012340 -
Trre6g01670 548 CDD RPA1_DBD_C 282 418 IPR047192 -
Trre6g01670 548 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Trre6g01670 548 CDD RPA1_DBD_B_like 140 242 - -
Trre6g01670 548 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01670 Trre-Chr6 13711492 13713972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01670 8 365 Core DNA Replication Machinery Family AT5G08020 22.788 6.30e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01670 - - tpra:123893724 664.455