Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01667 ATGTCAGTTCCTGCTCATGTCACACCTTTGCTTCAGATTGATAACACTAAGTCAGATTGGTTTATCAAAGTAAGAGTAGTAAGAATTTGGAATGTTAGAAGTATTATCGATCAGAATAAGATTAATGAGATTCAACTGATTTTTATTGATCAAGAGGGTTCAAAAATTCAAGGTACTGTCCCTGCTCACAGTATCGATCGTTTGGGCAGTCTCTTCTATGAAGGTGGTGTATACCTTATGGGAAATTTCCAGGTCAAACGTAACGTTGGCAAGTGCATGATTGCTATGAATCAGTTCAAGTTAGTTTTCATCACAAACACTGTGGTTATCCCATCACAGAGTTTAGTGATTCCTCACTATTCTCTGTTGATATTTTCATCTCAAAAGATTAGAAACTATGAAAATGGTTTAAGTCACTTGATTGATGTCATTGGAGTTGTTACTGATATTAAGGCAAAACAATCTCAGGAAATCAATGCTGTCAAAGTTACGTTAAATGATAAGAGAGGGACTTGTGAGTGTATTCTGGTTGGAATGTATGTTGATAAATTGAAGACACTGATGTCTGGATTACTCTCTGATGCACCCGTTCTTCTCTTACAATTTGTTCAAATCAAGAACAAAGGAGATTTTGTGTATGTTGAAAGTGTGGAAAATATCACTAGAATTTCCATGAACCCCCCTATTGTTGAGGTTGATCTTTTTAAGAATGAGATGGGAATCATTGATTCCTCATATCACTTGGCTGACAAAGACTGTTATTCAACTTCTAAACCATGCAAAGAGTTAGAGTTCAATGGGTTGTATCCTCACAAAACTCTCAATGATTTTATCCGCACAATGGAAGACGGATTGTTTGTTTTATTTTGCAAAGTTGTTGGTATTTTCAAACTTAGTCAGTGGTTTTATCCTGTCTGTCATTGCGGTGTTTTTCTGGAGTATGCAGGCGGATCTTATTATTGCGCTTGTTGCCATATTACTGTGTTCAGCGCTTCAGCTAGGTGCAAATTTCAAATTGGTATTCAAGATGCGACCTCTGCTGCACTTTTGCCAATATCCCAAACTGTGCTTCATGGAATTGGATTATTAAAAAACAATTCATCTTCTTCTGCTTTGAGTGGTAGTGTTGAAAATCCATTGATTGGAAAGATGTTGCTGTTAATTGCAAAAAAGAATCGAAGATTTGATGATTTGTCTGATAATGCAGTCGAAGTAATTCGTGTTACAGATGAAGCTGGTATTGTTAACCAGTATCACTTGACTGGAAACAATTATACTCCAACAAAGTGTATCTTAGAGACTCCTTTTGGTGAATTAACTTCGCCGATAATTATTCCTCCAGTTGTATCTCCTGTTCTAGAGTCTGTTGGTGCTGGAAAGTTGCAGCTAGATGAAAATGCATTCCAGAAAATTCTGGACGATTCTGCTGCGCAGTACCATAAAAAATATAACGAGTTCAAATTGCGCAATAACAGTGGCGCGTTTGCTGGTGGTTTCAATGATGATGCATCCTCTTCCAACATGATTTAG 1530 0.3699 MSVPAHVTPLLQIDNTKSDWFIKVRVVRIWNVRSIIDQNKINEIQLIFIDQEGSKIQGTVPAHSIDRLGSLFYEGGVYLMGNFQVKRNVGKCMIAMNQFKLVFITNTVVIPSQSLVIPHYSLLIFSSQKIRNYENGLSHLIDVIGVVTDIKAKQSQEINAVKVTLNDKRGTCECILVGMYVDKLKTLMSGLLSDAPVLLLQFVQIKNKGDFVYVESVENITRISMNPPIVEVDLFKNEMGIIDSSYHLADKDCYSTSKPCKELEFNGLYPHKTLNDFIRTMEDGLFVLFCKVVGIFKLSQWFYPVCHCGVFLEYAGGSYYCACCHITVFSASARCKFQIGIQDATSAALLPISQTVLHGIGLLKNNSSSSALSGSVENPLIGKMLLLIAKKNRRFDDLSDNAVEVIRVTDEAGIVNQYHLTGNNYTPTKCILETPFGELTSPIIIPPVVSPVLESVGAGKLQLDENAFQKILDDSAAQYHKKYNEFKLRNNSGAFAGGFNDDASSSNMI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01667 509 Gene3D - 5 111 IPR012340 -
Trre6g01667 509 Gene3D - 117 241 IPR012340 -
Trre6g01667 509 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Trre6g01667 509 CDD RPA1_DBD_A_like 22 109 - -
Trre6g01667 509 Gene3D - 268 355 IPR012340 -
Trre6g01667 509 SUPERFAMILY Nucleic acid-binding proteins 6 113 IPR012340 -
Trre6g01667 509 SUPERFAMILY Nucleic acid-binding proteins 129 239 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01667 Trre-Chr6 13703566 13705853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01667 3 345 Core DNA Replication Machinery Family AT5G45400 21.563 7.42e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01667 - - tpra:123914989 384.415