Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01655 ATGGTGAGGTCTTCAAGTTGTGAAAAAAACAGTGTCGTCAAAAGCGGTGTTTGGCTCGCAGAAGAAGACGCAAAGAAACCTACGTTTGTATCGGAACATGGTTCTGGTAATTGGAATTCTGTCCCCAAAAAAACAGGTGTTAAGAGGTGTGGAAAAAGTAGCAGGCTTAGGTTGAGTAGCTACATACCTGATCTTAAGCATGATAACTTTACATCGGAAGAAGAAGATTTAATCGTTAAGCTTCATGCGGCCATCGGTAGTAGGTGGTCTATAATAGCTCAACAACTACCTGGTAGAACAGACAATGATGTAAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGATCCTGTTACTCACAAACCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGCTACTACAAGTGCTGCTACTAATTCACAACACAGATTGATCGGAAACACAAACGACCGATCAATGCAATTGCGAACGAAAATGGAAACATCGATGTTTGGAGAAGGATGTTTGTCATCAACACTATCTACCTCATCTGCTTGTTCTTCAACTTCAACACAAGGAACAGCATATTTTGCACCATTTAGTTGGAATGATTTTCTTATAGAAGATGCTAATTTAGCTTCATCTATTAATAACCTGCAAGAAGAACAATATTTAGAGAAAAAGAAAGAGGTTATGTCATCATCCTCAGATATTTCATTTGTTGAAGCCATACTTGATCAAGAAAATGAGATGTTTCTAAGCTTTCCTGAACTTTTGGAGGAACCATCCAATTACTGA 804 0.3781 MVRSSSCEKNSVVKSGVWLAEEDAKKPTFVSEHGSGNWNSVPKKTGVKRCGKSSRLRLSSYIPDLKHDNFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGATTSAATNSQHRLIGNTNDRSMQLRTKMETSMFGEGCLSSTLSTSSACSSTSTQGTAYFAPFSWNDFLIEDANLASSINNLQEEQYLEKKKEVMSSSSDISFVEAILDQENEMFLSFPELLEEPSNY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01655 267 PANTHER F14D16.11-RELATED 166 267 - -
Trre6g01655 267 CDD SANT 69 112 IPR001005 -
Trre6g01655 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre6g01655 267 CDD SANT 18 57 IPR001005 -
Trre6g01655 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre6g01655 267 Gene3D - 7 67 - -
Trre6g01655 267 Gene3D - 68 130 - -
Trre6g01655 267 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Trre6g01655 267 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre6g01655 267 SMART sant 14 64 IPR001005 -
Trre6g01655 267 SMART sant 66 114 IPR001005 -
Trre6g01655 267 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Trre6g01655 267 FunFam Os07g0634900 protein 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01655 Trre-Chr6 13671092 13672111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01655 1 263 MYB Transcription Factor Family AT3G28470 40.317 1.37e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g01655 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01655 K09422 - gmx:100795381 264.618