Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01647 ATGGTTTCTTCGGCTTCTATTGTCAAAAATCTTCCTGGTTTTGATGGGGATCTTCCATTCAAGCTTGAAACTGGATACATAGGAGTGGGAGAAGGAGCAAAAGTTCAAATATTTTACTATTTTGTGGAGTCTCAAAGAAATCCCTTTGATCCAATTTTACTTTGGTTTGTTGGTGGTCCTGGATGCTCTGCCCTTTCAGCATTCTTTTTTGAAAATGGGCCTTTAAGAATGGATGAGAATTACAGTGAAAATCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATATACATAGATATGCCAGTAGGCACTGGATTTTCTTACTCAGAAACACAAGAAGGATACTATAGCAATGACACAATTTGGGTGGAACATACATATTCTTTTTTACAAAAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATTGGTGGTGGCTCATATTCAGGAATAACTACTGCTCCTCTTGTTCAAAAATTATATGAAGGATACATAGCAAAGACTGTGCCACACATAAACATCAAAGGTTATGTGATTGCAAGCCCGGCCGTTGACATATATCAGCCTATCAATACAAAAGTTTTGTATGCATACTATATGACTCTAATACCAAAAGAACTCTATGAGTCATTGGAAGAAAATTGTAAGGGTAATTATGTAAACATTGATCCAGCTAACACGAAGTGTCTCTCAGATTATGAAGATTTTTCTCAGCTAGTTCGTTATATAAACCAACAACAAATTTTAGAACCTCTTTGTATCACTACACCTGCTTTGAACCAAGTAATTCAACAACCAGTTCAAGAAGATCAAGAATTACAGTGTAGAAGTTATTATCATGTTCTTGTTAATGTATGGGCAAACGATGAAAATGTGCGGAAAGCCCTTCATGTCAGAGAGGGAACTAAAGGGGAGTTCATGGGGTGCAACAAAACTTTGGCATACACACAAAATCTAAAAGATGTTGTAGAATATTATCACAATCTAACCAATGCCAACATCCAAGCTCTCGTATATTGTTCTGATCTTGACATGTCAGTTCCACACATTGGTACACAATCTTGGATCAAGTCATTCAACATGAGCATACATGACAAATGGCGTGCATGGTTTGTCGAAGGTCAAGTGGCCGGGTTCACAGAAATCTACAAAATGAAAGAAGACCACTACTTAACATATGTGACCGTGAAGGGTGCTGGACATGTGGCTCATACATTCAAGCCCAAGGAAGTTTATAACATGATTAAGAGGTGGTTTTCATTTTCTCTTATCTAA 1305 0.3678 MVSSASIVKNLPGFDGDLPFKLETGYIGVGEGAKVQIFYYFVESQRNPFDPILLWFVGGPGCSALSAFFFENGPLRMDENYSENLPKLKLNPYGWTHMLNMIYIDMPVGTGFSYSETQEGYYSNDTIWVEHTYSFLQKWFIDHPKFSSNPFYIGGGSYSGITTAPLVQKLYEGYIAKTVPHINIKGYVIASPAVDIYQPINTKVLYAYYMTLIPKELYESLEENCKGNYVNIDPANTKCLSDYEDFSQLVRYINQQQILEPLCITTPALNQVIQQPVQEDQELQCRSYYHVLVNVWANDENVRKALHVREGTKGEFMGCNKTLAYTQNLKDVVEYYHNLTNANIQALVYCSDLDMSVPHIGTQSWIKSFNMSIHDKWRAWFVEGQVAGFTEIYKMKEDHYLTYVTVKGAGHVAHTFKPKEVYNMIKRWFSFSLI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01647 434 FunFam Carboxypeptidase 282 432 - -
Trre6g01647 434 SUPERFAMILY alpha/beta-Hydrolases 8 430 IPR029058 -
Trre6g01647 434 Gene3D - 284 432 - -
Trre6g01647 434 Pfam Serine carboxypeptidase 12 430 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 Gene3D alpha/beta hydrolase 2 275 IPR029058 -
Trre6g01647 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 401 414 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 91 103 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 164 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 114 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 418 IPR001563 GO:0004185|GO:0006508
Trre6g01647 434 FunFam Serine carboxypeptidase-like 19 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01647 Trre-Chr6 13610773 13615031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01647 283 430 Calmodulin-binding Proteins AT2G22960 37.838 5.02e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01647 K16296 - qsu:112035786 485.337