Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01646 ATGGGTTGGAGATGTAGCTATGTTGTTGTCTTAGTAGCTCTAACGTTTCTTCTGCCATTTATGGTTTCTTCGGCTTCTATTGTCAAAAATCTTCCTGGTTTTGATGGGGATCTTCCATTCAAGCTTGAAACTGGATACATAGGAGTGGGAGAAGGAGCAAAAGTTCAAATATTTTACTATTTTGTGGAGTCTCAAAGAAATCCCTTTGATCCAATTTTACTTTGGTTTGTTGGTGGTCCTGGATGCTCTGCCCTTTCAGCATTCTTTTTTGAAAATGGGCCTTTAAGAATGGATGAGAATTACAGTGAAAATCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATATACATAGATATGCCAGTAGGCACTGGATTTTCTTACTCAGAAACACAAGAAGGATACTATAGCAATGACACAATTTGGGTGGAACATACATATTCTTTTTTACAAAAGTGGTTTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATTGGTGGTGGCTCATATTCAGGAATAACTACTGCTCCTCTTGTTCAAAAATTATATGAAGGATACATAGCAAAGACTGTGCCACACATAAACATCAAAGGTTATGTGATTGCAAGCCCGGCCGTTGACATATATCAGCCTATCAATACAAAAGTTTTGTATGCATACTATATGACTCTAATACCAAAAGAACTCTATGAGTCATTGGAAGAAAATTGTAAGGGTAATTATGTAAACATTGATCCAGCTAACACGAAGTGTCTCTCAGATTATGAAGATTTTTCTCAGCTAGTTCGTTATATAAACCAACAACAAATTTTAGAACCTCTTTGTATCACTACACCTGCTTTGAACCAAGTAATTCAACAACCAGTTCAAGAAGATCAAGAATTACAGTGTAGAAGTTATTATCATGTTCTTGTTAATGTATGGGCAAACGATGAAAATGTGCGGAAAGCCCTTCATGTCAGAGAGGGAACTAAAGGGGAGTTCATGGGGTGCAACAAAACTTTGGCATACACACAAAATCTAAAAGATGTTGTAGAATATTATCACAATCTAACCAATGCCAACATCCAAGCTCTCGTATATTGTTCTGATCTTGACATGTCAGTTCCACACATTGGTACACAATCTTGGATCAAGTCATTCAACATGAGCATACATGACAAATGGCGTGCATGGTTTGTCGAAGGTCAAGTGGCCGGGTTCACAGAAATCTACAAAATGAAAGAAGACCACTACTTAACATATGTGACCGTGAAGGGTGCTGGACATGTGGCTCATACATTCAAGCCCAAGGAAGTTTATAACATGATTAAGAGGTGGTTTTCATTTTCTCTTATCTAA 1365 0.3692 MGWRCSYVVVLVALTFLLPFMVSSASIVKNLPGFDGDLPFKLETGYIGVGEGAKVQIFYYFVESQRNPFDPILLWFVGGPGCSALSAFFFENGPLRMDENYSENLPKLKLNPYGWTHMLNMIYIDMPVGTGFSYSETQEGYYSNDTIWVEHTYSFLQKWFIDHPKFSSNPFYIGGGSYSGITTAPLVQKLYEGYIAKTVPHINIKGYVIASPAVDIYQPINTKVLYAYYMTLIPKELYESLEENCKGNYVNIDPANTKCLSDYEDFSQLVRYINQQQILEPLCITTPALNQVIQQPVQEDQELQCRSYYHVLVNVWANDENVRKALHVREGTKGEFMGCNKTLAYTQNLKDVVEYYHNLTNANIQALVYCSDLDMSVPHIGTQSWIKSFNMSIHDKWRAWFVEGQVAGFTEIYKMKEDHYLTYVTVKGAGHVAHTFKPKEVYNMIKRWFSFSLI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01646 454 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 438 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 Gene3D - 304 452 - -
Trre6g01646 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 Gene3D alpha/beta hydrolase 22 295 IPR029058 -
Trre6g01646 454 Pfam Serine carboxypeptidase 32 450 IPR001563 GO:0004185|GO:0006508
Trre6g01646 454 FunFam Serine carboxypeptidase-like 19 21 288 - -
Trre6g01646 454 FunFam Carboxypeptidase 302 452 - -
Trre6g01646 454 SUPERFAMILY alpha/beta-Hydrolases 28 450 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01646 Trre-Chr6 13610713 13615031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01646 22 51 Calmodulin-binding Proteins AT2G22960 66.667 3.29e-06 45.8