Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01645 ATGGGTTGGAGATGTATCTATGTTGTTTTCTTAGTAGCTCTAATGTTTCTTCTGCCATTCATGGTTTCTTCTGCTTCTATTGTTAAAAACCTTCCTGGTTTTGATGGGGATCTTCCATTCAAGCTTGAAACTGGATACATAGGAGTTGGAGAAGGAGCAAAGGTGCAAATATTTTACTATTTTGTGGAGTCTCAAAGAAATCCCTTCATTGATCCAATTTTAATTTGGTTTGTTGGTGGTCCTGGATGCTCTGCCCTTACAGCATTCTTTTTTGAAAATGGGCCTGTAATAATCGATCGCAATTACACTGGGAACCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATATACATAGATATGCCAGTAGGGACTGGATTTTCTTACTCAGAAACTCAAGAAGGCTACTATAGCAGTGACACACTTTGGGTGGAACATTCATATACTTTTTTACAAAAGTGGTTTATTGATCATTCAAAGTTTAGTTCAAATCCATTTTATATCGGCGGCGGCTCATATTCAGGAGCACCTACCGGTCCTTTTGTTCAAAAAGTATATGAAGGATACAAAGCAGGACATGTGCCACACATAAATATCAAAGGTTATGTGATTGCAAGTGCATTTGTACTAGACGATGTTCCGAATACAAAAATGCAAGTTTTATTTGCATACCAAATGACACTTATATCAAAAGAACTCTATGAGTCATTGGAAGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAGATAACACAAAGTGTGTTGTAGATTTTCAAGCTTATTCTGAGATACTTCGTTATATAAACGTGCAACAAATTTTAGAACCTGTCTGCAAGACTACACCTGCCGTGAACCAAGTAATTCGACAACCAATTCAAGATGATCAAGAATTTCGGTGTAGAGGTTATGATCATATTCTTGTCAACTTATGGGCAAATGACGAAAATGTGCGGAAGGCCCTTTACATAAGAGAGGGAACTAAAGGGGAATTCTTGAGATGCAACAAGACTGATTTGGCATACACATTCAATCTAACCAATATTGTAGAATATTATCACAATCTCACACATGCCAACCTCCAAGCTCTCGTTTACAGTGGTGATCATGATTTGGTTGTACCACACCTGAGTGACAGTTATTGGATAAAGTCATTCAACATGAGCACACATGATAAATGGCGACCATGGTTTGTTGAAGGTCAAGTGGCTGGATTTACAGAAATCTACAAAATGAAAGAAGATCACTTCTTAACATATGCGACTGTGAAGGGTGCTGGACATGTGGCCCAGAATTATAATCCTAAGGAAGTTTATAATTTGATCAAGAGGTGGTTTTCATTTTCTCTTATCTAA 1374 0.3712 MGWRCIYVVFLVALMFLLPFMVSSASIVKNLPGFDGDLPFKLETGYIGVGEGAKVQIFYYFVESQRNPFIDPILIWFVGGPGCSALTAFFFENGPVIIDRNYTGNLPKLKLNPYGWTHMLNMIYIDMPVGTGFSYSETQEGYYSSDTLWVEHSYTFLQKWFIDHSKFSSNPFYIGGGSYSGAPTGPFVQKVYEGYKAGHVPHINIKGYVIASAFVLDDVPNTKMQVLFAYQMTLISKELYESLEENCKGDYVNIDPDNTKCVVDFQAYSEILRYINVQQILEPVCKTTPAVNQVIRQPIQDDQEFRCRGYDHILVNLWANDENVRKALYIREGTKGEFLRCNKTDLAYTFNLTNIVEYYHNLTHANLQALVYSGDHDLVVPHLSDSYWIKSFNMSTHDKWRPWFVEGQVAGFTEIYKMKEDHFLTYATVKGAGHVAQNYNPKEVYNLIKRWFSFSLI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01645 457 Pfam Serine carboxypeptidase 32 453 IPR001563 GO:0004185|GO:0006508
Trre6g01645 457 Gene3D alpha/beta hydrolase 22 295 IPR029058 -
Trre6g01645 457 FunFam Carboxypeptidase 304 455 - -
Trre6g01645 457 Gene3D - 307 455 - -
Trre6g01645 457 FunFam Serine carboxypeptidase-like 19 21 291 - -
Trre6g01645 457 SUPERFAMILY alpha/beta-Hydrolases 28 453 IPR029058 -
Trre6g01645 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Trre6g01645 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Trre6g01645 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Trre6g01645 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Trre6g01645 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 441 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01645 Trre-Chr6 13591060 13603412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01645 22 51 Calmodulin-binding Proteins AT2G22960 66.667 3.78e-06 45.4