Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01633 ATGAGACAATGTATTTTTGGTTCACCACTTGTTGTTATTGCTCTTTGTGTCTTCAATAGTTTGTTTAACTTTACACAAGCACAAACTCAAACTGCAATAGCTACTACAGATCCTTATGAAGCTGGAGTTATAAATTCAATATTTAGAAAATGGAGAATATCAGCTGACAAAACTTCATGGAACATAAGCGGTGAGATATGTAGCGGAAAAGCCATTGATAGCACCACTTCCATTGGTGATGTAACTCATAACCCTTTCATCAAATGTGATTGTTCCTTCAACAAAAAAACTACTTGCCGCATCACCGCACTGAAAGTTACCGTATTGGATGTGATTGGTGAAATTCCACCAGAGTTATGGACTCTAACTCATCTCACCGTTTTGAACCTTGCCCAGAATTACTTGACGGGGTCTCTACCTCCCGCGATTGGAAATTTGACTCGTATGCAATACATGAGCTTTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAATTGGGAAATCTTACTCAGTTGATTTTATTGGCTTTTGGGGGTAACAAGTTATCAGGGTCTTTGCCATCTGAACTTGGGAAGCTGGTAAATCTAGCAAATTTCTACATGGATAGTTCTGGAATCAGTGGTCCAATTCCACCCACATTTGCAAGCCTTAAGAATATGATGTTATTATATGCTTCAGACAATAATCTCACTGGTAGAATACCTGACTTCATAGGAAGTTGGTCCAAGCTTCAAAATTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGTAGTTCCTCATTGAATGTAATAAAGAACTTGAAGTCTATGACAATCTTAGATTTGAGAAATAACAACATTTCTGGTTCAATTCCTTCCACCATCGGAGAATTTGAAAATTTGACCTTGCTGGACTTAAGCTTCAATAAAATCTCAGGACAAATACCGGGATCAATTTTCAATTTGAGTTCACTATCTTCCTTGTTTCTTGGAAATAACACACTTAGTGGCACTCTCCCTCAGCAGAAAAGTTCATTTCTTAACAACATAGACTTGTCATACAATGATCTATCAGGAATCCTCCCTTCTTGGACAAACGAGCCAAATTTACAACTGAATGTAGTTGCCAACAACTTGACAATAGTAAATTCAAATACCAGTGGTTTGCCTACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCAAGATATTCTGACTTTGCAATCAAGTGCGGTGGTCCACAAATTACAACTACAGATGGAATTGTGTATCAAACGGACAATGAGACACTTGGTCCTGCTACATACTTTGTTACTGATACAAATAGATGGGCTGTTAGTAATGTTGGAAAGTTTACCGGGAGCAACGATCCTCTTGTGTTCAAACTCTCTGTTTCAAATCAGTTCACTCATACTGCGAATCCAGAGCTTTTTCAAACTGCTCGGCTCTCTGCATCATCATTAAGATATTACGGTCTGGGGCTAGAAAATGGTTTTTACAACATTACCCTACAATTTGCAGAAACAGTTATTCTAGATTCTACCACATGGAAAAGCCTCGGGAGACGAGTCTTTGATATTTATATCCAGGGATCTCGTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTAGAGGTGTGTCTTACAGAGCTGTTCAAAAGCAATTTAGGTCTGAAGTGAAAGAAAACTATCTTGAGGTCCATCTTTTTTGGGCCGGAAAAGGGACTTTGTCCATACCTGGACCTGGCGAAGTTACTTATGGTCCCTTGATTCAAGCCATCAGTGCTACCCCAGATTTCATACCTACTGTGAGCAATAAACCTCCCGGGCCCAGCAGTAAAAAGAATAGCGTGGGTCTAATCATTGGAATTGTTGTGGGTGTTGGAGTTATTTGCTTTCTAGCAGTTTTGGCCATTATCTATATCATTCGAAGAAGAAAACAGTATGAAGACGATGATGAGCTTGTAGGCATTGATACGATGCCAAACACTTTCAGCTATTATGAGTTAAAAAATGCTACAGGCGACTTCAATCGTGACAATAAACTTGGAGAGGGGGGTTTTGGACCTGTGTATAAGGGGACACTTAATGATGGAAGACTTGTGGCTGTAAAACAATTATCTATAGGATCCCATCAAGGAAAGAGCCAGTTTGTAGCTGAGATTGCAACTATATCTGCTGTGCAACACCGTAATCTCGTCAAATTATATGGATGTTGTATTGAAGGAAGTAAAAGACTTCTTGTCTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTACTCAATTGGTCAACCCGCTATGATGTTTGTATGGGTGTTGCAAGAGGTTTGACATATTTACATGAGGAGTCACGGCTCCGGATTGTGCACCGCGATGTGAAAGCTAGTAATATTCTACTCGACTCTAAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCCAAATTATATGATGATACAAAAACGCATATAAGCACACGTGTTGCTGGGACGATTGGATATCTTGCACCGGAGTATGCTATGCGTGGACACCTCACAGAGAAAGCGGATGTTTTTTCCTTTGGTGTTGTGGCTCTTGAGTTAGTTAGTGGGAGGCCAAATTCCGATTCAAGTTTGGAAGGAGAAAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAAGAACTGTATAAATGATCTGGTAGATTCTAGACTATCAGAATTTAACACGGAAGAAGTCCAACGCCTTGTGAAAATAGGACTTTTGTGCACTCAGACATCACCAAACTTACGGCCATCGATGTCACGTGTAGTGGCAATGCTTTCAGGAGATATGGAAGTGAGTGTTGTAACAGCAAGGCCCGGATACTTGACTGACTGGAAATTTAACGATGTTAGCAGCATCATGACTGATATTTCAACGACGGGGTTGGATTCAAGTTATTACAATTCATCAAGTCCCAGTATAGTTGGTGGTGGATATATTCATTCACCAAATGATCCATCTAAATCCATCCTTCATTAG 3096 0.3957 MRQCIFGSPLVVIALCVFNSLFNFTQAQTQTAIATTDPYEAGVINSIFRKWRISADKTSWNISGEICSGKAIDSTTSIGDVTHNPFIKCDCSFNKKTTCRITALKVTVLDVIGEIPPELWTLTHLTVLNLAQNYLTGSLPPAIGNLTRMQYMSFGINALSGELPKELGNLTQLILLAFGGNKLSGSLPSELGKLVNLANFYMDSSGISGPIPPTFASLKNMMLLYASDNNLTGRIPDFIGSWSKLQNLRFQGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLNVIKNLKSMTILDLRNNNISGSIPSTIGEFENLTLLDLSFNKISGQIPGSIFNLSSLSSLFLGNNTLSGTLPQQKSSFLNNIDLSYNDLSGILPSWTNEPNLQLNVVANNLTIVNSNTSGLPTGLNCLQKNFPCNRGAARYSDFAIKCGGPQITTTDGIVYQTDNETLGPATYFVTDTNRWAVSNVGKFTGSNDPLVFKLSVSNQFTHTANPELFQTARLSASSLRYYGLGLENGFYNITLQFAETVILDSTTWKSLGRRVFDIYIQGSRVLKDFDIQREARGVSYRAVQKQFRSEVKENYLEVHLFWAGKGTLSIPGPGEVTYGPLIQAISATPDFIPTVSNKPPGPSSKKNSVGLIIGIVVGVGVICFLAVLAIIYIIRRRKQYEDDDELVGIDTMPNTFSYYELKNATGDFNRDNKLGEGGFGPVYKGTLNDGRLVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLLLNWSTRYDVCMGVARGLTYLHEESRLRIVHRDVKASNILLDSKLVPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCINDLVDSRLSEFNTEEVQRLVKIGLLCTQTSPNLRPSMSRVVAMLSGDMEVSVVTARPGYLTDWKFNDVSSIMTDISTTGLDSSYYNSSSPSIVGGGYIHSPNDPSKSILH 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01633 1031 SUPERFAMILY L domain-like 103 398 - -
Trre6g01633 1031 Pfam Malectin domain 427 615 IPR021720 -
Trre6g01633 1031 FunFam Leucine-rich repeat receptor-like protein kinase 425 619 - -
Trre6g01633 1031 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515
Trre6g01633 1031 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 993 - -
Trre6g01633 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 774 977 - -
Trre6g01633 1031 Pfam Protein tyrosine and serine/threonine kinase 701 965 IPR001245 GO:0004672|GO:0006468
Trre6g01633 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Trre6g01633 1031 FunFam Leucine-rich repeat receptor-like protein kinase 667 773 - -
Trre6g01633 1031 ProSiteProfiles Protein kinase domain profile. 698 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01633 1031 SUPERFAMILY Protein kinase-like (PK-like) 681 991 IPR011009 -
Trre6g01633 1031 Gene3D Phosphorylase Kinase; domain 1 668 773 - -
Trre6g01633 1031 SMART LRR_typ_2 170 194 IPR003591 -
Trre6g01633 1031 SMART LRR_typ_2 122 146 IPR003591 -
Trre6g01633 1031 SMART LRR_typ_2 314 338 IPR003591 -
Trre6g01633 1031 SMART LRR_typ_2 290 313 IPR003591 -
Trre6g01633 1031 Gene3D Transferase(Phosphotransferase) domain 1 774 976 - -
Trre6g01633 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 280 403 - -
Trre6g01633 1031 Gene3D Ribonuclease Inhibitor 281 403 IPR032675 -
Trre6g01633 1031 Gene3D Ribonuclease Inhibitor 44 280 IPR032675 -
Trre6g01633 1031 Gene3D - 427 619 - -
Trre6g01633 1031 SMART serkin_6 698 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01633 1031 ProSiteProfiles Leucine-rich repeat profile. 316 338 IPR001611 GO:0005515
Trre6g01633 1031 CDD STKc_IRAK 704 965 - -
Trre6g01633 1031 FunFam Os05g0263100 protein 41 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01633 Trre-Chr6 13515398 13527527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01633 149 991 Receptor kinase-like Gene Family AT1G56120 63.152 0.0 1083
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g01633 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01633 - - mtr:25502389 1636.31