Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01623 ATGGCATCCTGCTTGAAGCCACAAAGCAGCAATGAAGATGACTCTGTCATACTCTTTTCAACTTCTAATTCTTCCATTAGTCCTTCTTCCTCTTCTTTCCACCATTCACCACCACATAGTTCATACAAACTTTCCATCAAAAACCTCACCTATACTTTGCACCCTTATAAAACCATTATCCCATTTTCATTCTCATTTTCTCATTTAACTCAAAAACCACATCCTATAAATATACTCAAATCTGTCTCTTTTGTTGCTCGAACGTCCGAGATTGTTGCGGTTGTCGGTCCTAGTGGCACCGGAAAATCAACCCTTCTAAAAATAATCGCGGGGCGAGTCAAAGATAAAGACTTCAACCCAAAAACTATATCAATCAATGATCAACCTATGAGTACTCCATCTCATTTAAGAAAAATATGTGGCTTTGTTTCACAAGAAGATAACTTGCTTCCACTTCTAACAGTGAAAGAAACATTGCTTTTTAGTGCAAAGTTTAGATTAAAAGAAATGACACCAAAAGAAAGAGAATTGAGAGTAGAAAATTTAATGCAAGAGTTAGGACTTTTTCATGTTCAAGATAGTTTTGTTGGTGATGAAGAAAATAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTATCCATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACTTCAGGACTTGATAGTACTTCAGCTCTTCATGTAATTGAGCTTTTGTCATCAATGGTTAAATCAAAACAAAGGATAGTGATCCTTTCAATTCATCAACCTAGCTATAGAATATTGCAATATATTTCTAAGTTCTTAATCCTTTCTCATGGATCAGTTGTTCATAATGGTAGTTTGGAATCATTAGAGAAAACCATATCCAATTTGGGATTTCACATTCCATTACAACTTAATGCTCTTGAATTTTCAATGGAAATTATACAAAGTTTAGAAGATTCTAGTACTAGTAGTTCGGTCGTTGTTGCAGACGAAAATGAAACTTGTTTTCCAAGTTACATGTGGCAAGAAGAAGAAAAGGGTTATGAAAAGGAAAGTTTTGGAAATGATTGTTATGTAAACATGATGGAGATACTATTTCTATGTTCAAGATTTTGGAAGATTATTTATAGAACAAAACAACTTTTCTTAGCAAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGCAAGTGTTTATATAAAAGTAAGAAAAGATGAAGATGGAATTGCAGAAAGATTAGGTCTATTTGCATTTAGTCTAAGTTTTCTTTTATCTTCAACAGTTGAAGCACTTCCAATATATCTTCAAGAAAGAACTGTTCTTATGAAAGAAGCATCAAGAGGAGCTTATAAAATCTCTTCTTACATGATAGCCAACACTTTTGTTTTTCTTCCTTTTTTGTTTGTTGTTTCAACACTTTTTGCAGTTCCTGTTTATTGGATTGTAGGACTCAATCCTTCAATCAGTTCCTTCATTTTTTTCACTTTTGTGGTTTGGCTTATTGTGCTCATGGCAAGTTCTTTAGTACTCTTCTTAAGTTCTGTGTCTCCTGATTTCATTTCAGGAAATTCTCTAATCTGCACTGTTCTTGGAGCTTTCTTTTTGTTCTCTGGTTACTTTATACCAAAAGAGAGTATTCCAAAATACTGGCTTTTTATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCATTACTGACAAATGAGTATTGGAATGTTGGAAATGAGTGTTTCTCACAAGGGTCTTCATCAAAGTGTTTGATTACTGGTTTTGATGTGTTGAAGAGTAGAGGGATTGATAAGGATAATAGGTGGATGAATGTGGGAATAATGGTTGGATTCTTTGTGTTCTATCGTTTGCTTTGTTGGGTTATACTTGCTAGAAAAGCCTCCAAGACAACAATATAA 1923 0.3401 MASCLKPQSSNEDDSVILFSTSNSSISPSSSSFHHSPPHSSYKLSIKNLTYTLHPYKTIIPFSFSFSHLTQKPHPINILKSVSFVARTSEIVAVVGPSGTGKSTLLKIIAGRVKDKDFNPKTISINDQPMSTPSHLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKEMTPKERELRVENLMQELGLFHVQDSFVGDEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEKTISNLGFHIPLQLNALEFSMEIIQSLEDSSTSSSVVVADENETCFPSYMWQEEEKGYEKESFGNDCYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKEASRGAYKISSYMIANTFVFLPFLFVVSTLFAVPVYWIVGLNPSISSFIFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVGNECFSQGSSSKCLITGFDVLKSRGIDKDNRWMNVGIMVGFFVFYRLLCWVILARKASKTTI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01623 640 Pfam ABC-2 type transporter 367 575 IPR013525 GO:0016020|GO:0140359
Trre6g01623 640 Pfam ABC transporter 79 232 IPR003439 GO:0005524
Trre6g01623 640 SMART AAA_5 88 290 IPR003593 GO:0016887
Trre6g01623 640 Gene3D - 64 308 IPR027417 -
Trre6g01623 640 ProSitePatterns ABC transporters family signature. 204 218 IPR017871 GO:0005524|GO:0016887
Trre6g01623 640 Pfam ABC-2 type transporter 262 329 IPR043926 GO:0140359
Trre6g01623 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 298 IPR027417 -
Trre6g01623 640 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 305 IPR003439 GO:0005524
Trre6g01623 640 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 625 - -
Trre6g01623 640 FunFam ABC transporter G family member 23 70 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01623 Trre-Chr6 13427447 13429369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01623 76 334 Calmodulin-binding Proteins AT2G36910 27.076 1.89e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01623 K05681 - gmx:100783883 970.304