Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01616 ATGGCTATTCTTCCTTTCATACTCGTTATTACTAAGCTACTTTTATTCTTCTTCTTCAAATTTTCCTTTGCAACAGATACCATTACACAATCACAGTCACTTCCAGATGGAAGCACCTTGGTTTCTAAGGGTGGAATATTTGAGTTGGGTTTCTTCAATCTTGGTGATTCCACAAACCGCTATGTTGGAATCTGGTACAAAAATATTCCTATTAGAAGAGTTGTTTGGGTTGCTAACCGTGACAACCCGATTAAAGATAATTCTAGCAAGTTAGTCATAAGTCATGATGGAAACCTTGTGCTACTCAATGAGAATCATTCTCTTCTTTGGTCAACAAACACATCAACAACAAAGGTTTCAAATTCCATTCCATTTGTGCAACTCTTGGACGATGGAAATTTCGTACTAAAAAATGAGAAGCAGACCGGTGATGAAAATTTTCTATGGCAGAGTTTTGATCATCCTAGTGACACAATATTGCCAGGAATGAAGATTGGATGGGACAAAAAAAGGGGTCTTGATAGGCGTCTCACGGCATGGAAAAATTGGAATGATCCATCTTCAGGTGAGCTTACTTCAGTTATGGTATTAACACCTAATCCTGAAACCTTTATTTCAAAAGGCTTGACAAAACTCTACAGGACAGGACCATGGACTGGTCGTCGATCGAGTGGAATAATTGGATTGAGAGAAAATCCACTTTATAATTATGAATTTCTCAATAATAAAGATGAAGTATATTATATGTTTACGCTCAAGAATAACTCTGTGGTTTCTATAGTTGTTATTAACGAAACCCTTTTAGTTCGTCAACGCCTCGTTTGGATTCAAGAATCCAAAACATGGAATATTTACCAAACCTTACCGCAAGATAATTGCGATATGTACAATATTTGTGGAGCGAATGGAATATGTGTTCTTGATGCATCGCCTATGTGTCAATGTTTCAAGGGATTTAAGCCAAAATCACCACAACAGTGGAGTGCAACAGATTGGACACAAGGATGTGTGCGTATTGGTAATTGGAGTTGTGAGGCAAAAGTCAATGATGGATTCGAAAAAATTTCTGGAATGAAATTGCCGGATACTGCACATTCTTGGATCGATGAGAAAATGACACTAGAAAATTGCAAGGCTAAATGTTTGGAAAATTGTTCATGCAGTGCTTACTCAAGTTTAGACGCGAGTGGAGTAGGTAATGGTTGTTCTATCTGGTTTGGTGATCTAATTGACCTTAGAGTTTCACCTACTGGACAAGACCTGTATATTCGAAGGGAAGCTTCAAATATAGGTGATAAAAATAGCCATACCAAAAAGGTAGTATTGGCAGTTTCAATTACAGTTCCAACAATCCTTGTGATGTTATTGGCAATCACCTACATATATATAACAAAGGCAAAGTATAAAAGAGAGAAAGAAGAAGACACACATAAAGATTTTGAGCTTCCTTTCTTTGATCGAGCTACAATATTGAAGGCAACAAAAAACTTCTCTCTTGATAACAAGCTCGGTGAAGGTGGTTTTGGATCTGTATACAAGGGTACATTGCTTAATGGACAAGAAATTGCTGTCAAAAGACTTTTAATTAGTTCGGGTCAAGGATTAAAGGAGTTTAAAAATGAAGTTATGTTATGTGCTAAACTTCAACACCGGAATCTTGTTAAGGTTGTCGGTTTTTGTATTGAAGGAGAGGAGAAAATGTTGATTTATGAATACATGTCCAACAAAAGTCTTGATTCATTTCTTTTTGATTTTGGGATAGCTAGAATATGTGGAAATGATCAAATTGAAGGGAACACAAACAAAATAGTTGGCACATACGGTTACATGGCACCTGAATATGCTTTTGATGGATTATTCTCGATAAAATCAGATGTATTTAGCTTCGGTGTATTATTATTAGAAATTATCAGCGGAAAGAAAAATAGAGCACATAACTACCAAGAACGCGATCAAAATCTTATTGGATATGCTTGGAGATTGTGGAAAGAAGGCACTCCTCTCAAATTGATTGATGATTATATAAAGGAATCATGTATTGAATCTGAAGCATTACGTTGCATTCAAATTGGTCTATTATGCCTACAACATCATCCTGATGATAGGCCAAGCATGACATCCGTTATTTTGATGTTGAGTAGCGAAAGTACTTTATCTTATAATCTAAAGGAACCCGGTTTCTTAATTAAAAAGTTAGCAGCTGAAGGAGAACCTTCTTCTTCATAA 2226 0.3616 MAILPFILVITKLLLFFFFKFSFATDTITQSQSLPDGSTLVSKGGIFELGFFNLGDSTNRYVGIWYKNIPIRRVVWVANRDNPIKDNSSKLVISHDGNLVLLNENHSLLWSTNTSTTKVSNSIPFVQLLDDGNFVLKNEKQTGDENFLWQSFDHPSDTILPGMKIGWDKKRGLDRRLTAWKNWNDPSSGELTSVMVLTPNPETFISKGLTKLYRTGPWTGRRSSGIIGLRENPLYNYEFLNNKDEVYYMFTLKNNSVVSIVVINETLLVRQRLVWIQESKTWNIYQTLPQDNCDMYNICGANGICVLDASPMCQCFKGFKPKSPQQWSATDWTQGCVRIGNWSCEAKVNDGFEKISGMKLPDTAHSWIDEKMTLENCKAKCLENCSCSAYSSLDASGVGNGCSIWFGDLIDLRVSPTGQDLYIRREASNIGDKNSHTKKVVLAVSITVPTILVMLLAITYIYITKAKYKREKEEDTHKDFELPFFDRATILKATKNFSLDNKLGEGGFGSVYKGTLLNGQEIAVKRLLISSGQGLKEFKNEVMLCAKLQHRNLVKVVGFCIEGEEKMLIYEYMSNKSLDSFLFDFGIARICGNDQIEGNTNKIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIISGKKNRAHNYQERDQNLIGYAWRLWKEGTPLKLIDDYIKESCIESEALRCIQIGLLCLQHHPDDRPSMTSVILMLSSESTLSYNLKEPGFLIKKLAAEGEPSSS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01616 741 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Trre6g01616 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 572 - -
Trre6g01616 741 Pfam Protein tyrosine and serine/threonine kinase 498 582 IPR001245 GO:0004672|GO:0006468
Trre6g01616 741 Pfam Protein tyrosine and serine/threonine kinase 584 709 IPR001245 GO:0004672|GO:0006468
Trre6g01616 741 SUPERFAMILY Protein kinase-like (PK-like) 481 714 IPR011009 -
Trre6g01616 741 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Trre6g01616 741 SMART blect_4 31 155 IPR001480 -
Trre6g01616 741 Gene3D - 20 152 IPR036426 -
Trre6g01616 741 Gene3D Hepatocyte Growth Factor 343 421 - -
Trre6g01616 741 CDD PAN_AP_plant 343 424 - -
Trre6g01616 741 Pfam PAN-like domain 344 412 IPR003609 -
Trre6g01616 741 ProSiteProfiles Protein kinase domain profile. 390 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01616 741 Gene3D Transferase(Phosphotransferase) domain 1 573 710 - -
Trre6g01616 741 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 703 - -
Trre6g01616 741 CDD EGF_CA 291 323 - -
Trre6g01616 741 SMART ntp_6 347 425 IPR003609 -
Trre6g01616 741 PIRSF SRK 584 741 IPR024171 GO:0004674
Trre6g01616 741 PIRSF SRK 1 584 IPR024171 GO:0004674
Trre6g01616 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 592 717 - -
Trre6g01616 741 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Trre6g01616 741 Gene3D Phosphorylase Kinase; domain 1 459 572 - -
Trre6g01616 741 Pfam D-mannose binding lectin 74 181 IPR001480 -
Trre6g01616 741 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Trre6g01616 741 ProSiteProfiles Bulb-type lectin domain profile. 25 149 IPR001480 -
Trre6g01616 741 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Trre6g01616 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 152 - -
Trre6g01616 741 CDD B_lectin 31 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01616 Trre-Chr6 13393187 13396156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01616 473 730 Receptor kinase-like Gene Family AT4G23150 44.586 6.63e-80 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g01616 PK_Tyr_Ser-Thr 6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01616 - - tpra:123915292 1120.92