Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01608 ATGTTGATCTATGAATACATGCCCAACAAAAGTCTCGATTCATTTCTTTTTGATCCATTTCAAAGTAAATTGTTAGACTGGTCTGCACGTTTTAACATTCTATTTGGAATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGTTACGAATCATACACAGAGATTTGAAAGTAAGTAATATTTTATTAGACGATGATATGAATCCAAAGATTTCCGACTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAGGGGAGAACAAACAGAATAGTCGGCACATACGGCTATATGGCACCAGAATATGCTTTTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTATTGTTGGAAATTATCAGTGGAAAGAAAAATAGAGCACATAGTTACCAGGACCACGATCACAATCTTATTGGATATGCATGGAGGTTGTGGAAAGAGGGCATACCACTCACATTGATGGACGATTATTTAAGGAATTTATCTATTGAATCTGAAGTATTACGTTGCATTCAAATTGGTCTACTATGCCTACAACATCATCCTGATGATAGACCAAACATGACAACCGTAGTTGTGATGATGAGTAGTGAAAATATTTTGCCAAAACCAAAGGAACCTGGTTTGTTAATTAAAAGATTCTCAGTTGATGGAGAACCTTCTTCTGAGAAACAAACATCTTCCTCAACAAATGAAATAACTATCTCACTAGTAGACGCTAGATAG 747 0.3574 MLIYEYMPNKSLDSFLFDPFQSKLLDWSARFNILFGIARGLLYLHQDSRLRIIHRDLKVSNILLDDDMNPKISDFGMARMCGGDQIEGRTNRIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIISGKKNRAHSYQDHDHNLIGYAWRLWKEGIPLTLMDDYLRNLSIESEVLRCIQIGLLCLQHHPDDRPNMTTVVVMMSSENILPKPKEPGLLIKRFSVDGEPSSEKQTSSSTNEITISLVDAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01608 248 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 7 210 - -
Trre6g01608 248 Pfam Domain of unknown function (DUF3403) 204 248 IPR021820 GO:0004674
Trre6g01608 248 MobiDBLite consensus disorder prediction 227 248 - -
Trre6g01608 248 MobiDBLite consensus disorder prediction 225 248 - -
Trre6g01608 248 Gene3D Transferase(Phosphotransferase) domain 1 7 210 - -
Trre6g01608 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Trre6g01608 248 SUPERFAMILY Protein kinase-like (PK-like) 1 214 IPR011009 -
Trre6g01608 248 Pfam Protein tyrosine and serine/threonine kinase 1 199 IPR001245 GO:0004672|GO:0006468
Trre6g01608 248 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01608 248 SMART serkin_6 2 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01608 248 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01608 Trre-Chr6 13353382 13354377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01608 1 246 Receptor kinase-like Gene Family AT4G23150 54.656 2.19e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g01608 PK_Tyr_Ser-Thr 2.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01608 - - tpra:123915292 426.017