Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01607 ATGATATTTCGAATTTTATTCTCTTTTTTTAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATTGAAGGTGAGGAGAAAATGTTGATCTATGAATACATGCCCAACAAAAGTCTCGATTCATTTCTTTTTGATCCATTTCAAAGTAAATTGTTAGACTGGTCTGCACGTTTTAACATTCTATTTGGAATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGGTTACGAATCATACACAGAGATTTGAAAGTAAGTAATATTTTATTAGACGATGATATGAATCCAAAGATTTCCGACTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAGGGGAGAACAAACAGAATAGTCGGCACATACGGCTATATGGCACCAGAATATGCTTTTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTATTGTTGGAAATTATCAGTGGAAAGAAAAATAGAGCACATAGTTACCAGGACCACGATCACAATCTTATTGGATATGCATGGAGGTTGTGGAAAGAGGGCATACCACTCACATTGATGGACGATTATTTAAGGAATTTATCTATTGAATCTGAAGTATTACGTTGCATTCAAATTGGTCTACTATGCCTACAACATCATCCTGATGATAGACCAAACATGACAACCGTAGTTGTGATGATGAGTAGTGAAAATATTTTGCCAAAACCAAAGGAACCTGGTTTGTTAATTAAAAGATTCTCAGTTGATGGAGAACCTTCTTCTGAGAAACAAACATCTTCCTCAACAAATGAAATAACTATCTCACTAGTAGACGCTAGATAG 870 0.3448 MIFRILFSFFKEFKNEVILCAKLQHRNLVKVVGCCIEGEEKMLIYEYMPNKSLDSFLFDPFQSKLLDWSARFNILFGIARGLLYLHQDSRLRIIHRDLKVSNILLDDDMNPKISDFGMARMCGGDQIEGRTNRIVGTYGYMAPEYAFDGLFSIKSDVFSFGVLLLEIISGKKNRAHSYQDHDHNLIGYAWRLWKEGIPLTLMDDYLRNLSIESEVLRCIQIGLLCLQHHPDDRPNMTTVVVMMSSENILPKPKEPGLLIKRFSVDGEPSSEKQTSSSTNEITISLVDAR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01607 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 93 105 IPR008271 GO:0004672|GO:0006468
Trre6g01607 289 Gene3D Transferase(Phosphotransferase) domain 1 48 251 - -
Trre6g01607 289 MobiDBLite consensus disorder prediction 268 289 - -
Trre6g01607 289 SUPERFAMILY Protein kinase-like (PK-like) 9 254 IPR011009 -
Trre6g01607 289 Gene3D Phosphorylase Kinase; domain 1 7 47 - -
Trre6g01607 289 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 48 251 - -
Trre6g01607 289 Pfam Protein tyrosine and serine/threonine kinase 11 240 IPR001245 GO:0004672|GO:0006468
Trre6g01607 289 MobiDBLite consensus disorder prediction 266 289 - -
Trre6g01607 289 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 270 - -
Trre6g01607 289 SMART serkin_6 3 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01607 289 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01607 289 Pfam Domain of unknown function (DUF3403) 245 289 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01607 Trre-Chr6 13353382 13354500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01607 12 287 Receptor kinase-like Gene Family AT4G23150 54.874 2.22e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g01607 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01607 - - tpra:123915292 486.878