Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01606 ATGGCCATTATTCTTCATACCCTTCCTTTAATTACAAAGTTACTACTAGTATTATTATTATTACTCTTCTCCAAAATTTCCTCAGCAATAGATACCATTACACAATCACAGCCACTTTCAGATGGAAGCACCTTGGTTTCTAAGGGTGACATATTTGAGTTGGGTTTCTTCAATCTTGGTAATTCCACAAACCGCTATGTTGGAATTTGGTACAAAAATATCCCTGTTAGAAGAGTTGTTTGGGTTGCCAATCATGACAACCCAATCAAAGACAAATTTAGCAAGTTGATCATAAGTTCCAATGGAAACCTTGTGCTTCTAAATCAAAATCAAACTCTTCTATGGTCAACAAACATAACTACAAAGGTCGCAATTTCAAGTCCAATTGTTCAACTTTTGGACGATGGAAATTTAGTACTTAAAAACAAGACGCGGAACAACATTGACGAAAATTTTCTATGGCAGAGTTTTGATTATCCTAGTGATACAATATTACCGGGAATGAAGGCCGGATGGGACAAAAAAAAGGGCCTCGATAGGAATATCGTTGCATGGAAAAATTGGGATGATCCGTCTTCAAGTGACTATACTTCAGCTATGGTATTAACACCTAATCCTGAAAGCTTTATTTGGAAAGGCTCAACAAAAGTCTATAGAACAGGACCATGGACTGGTCCTCGATCTAGTGGAATAGTTGGATTGACAGAAAATCCAATTTATAATTACGAGTTTGTCAACAATGAAGATGAAGTGTATTATCTATTCACACTCAAGAATAGTTCAGTTGTTTCGATAGTTGTTTTGAACCAAACGACTTCTGTTCGTCAACGTCTCATTTGGATTTCAGAATCCAAAACATGGAATGCTTACCTAACATTGCCACAAGATAATTGTGATGTATATAATATTTGTGGAAAAAATGGGCTTTGTACGCTTAATGAATCACCTATATGTCAATGTTTAGATGGATATAAGCCGAAGTCGCCACAACAATGGAATGCAACAGATTGGAGACAAGGATGTGTGCGCAATGGTAATTGGAGTTGTGGCGTCAAAAATAGAGATGGGTTTAAGAGAATTGCTGGGATGAAATTGCCGGATACTACATATTCTTGGATTGATGAGAAAATGACACTTGAAAAATGCAAGGCTAAATGCTTGGAAAATTGTTCATGTAGTGCTTACTCAAATTTAGACTCAACTGGAACAGGTCTTGGTTGTTCTATTTGGTTTGGTGATCTTATTGATCTTAGAGTTTCACAAAGTGGACAAGACCTATATATTCGAATAGACTCATCGGATATCGATGATAAAAATGGACAAATTAAAATAGTATTGGCGGTTTCAATTCCAGTTTCCGTAGTCCTTGTGATGGTTTTGGTCTTCACCTACATATATGTGACAAAGGCAAAGTATAAAAGAAAAATAGAGATAGCAACAACATCAGAAGCGAAAGAAGATAAATATGATGATTTTGAGCTTCCTATCTTTGATCAAGCTACAATACTCAAGGCAACAAATAACTTCTCTATTGACAACAAGCTCGGTGAAGGTGGTTTTGGACCAGTATATAAGGGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGACTTTCACAGAGTTCTGGTCAAGGACTTAAAGAATTCAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATTGAAGGAGAGGAGAAAATGTTGATCTACGAATACATGTCCAACAAAAGTCTCGATTCATTTCTTTATGATCCATTTCAAAGTAAATTGCTAGATTGGTCCACACGCTTTAACATTCTATTTGGAATTGCTCGGGGCCTTCTTTATCTTCATGAAGATTCAAGATTAAGAATTATACACAGAGATATGAAAGCGAGTAATATTTTATTGGACGATGATATGAATCCCAAAATTTCTGATTTTGGCATGGCTAGAATGTGCGGAGGTGATCAAATTGAGGGGAGAACAAACAGAATAGTAGGCACATACGGCTATATGGCACCAGAATATGTGATTGATGGATTATTCTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTATTATTAGAAATTATCAGTGGCAAGAAAAATAGAGCAGATAGCTATCAAGAGCACGATCAGAATCTTATTGGATATGCGTGGAGGTTGTGGAAAGAAGGCAAACCACTCAATTTGGTTGATGATTATTTGAGGAATTCATGTATTGAATCTGAAGCATTACGTTGCATTCAAATTGGTCTACTATGCCTACAACATCATCCTGATGATAGACCAAACATGACATTTGTAGTTGTGATGCTAAGTAGCGAAAGTACTTTACCGAAACCAAAGGAGCCTGGTTTATTAGTTACAAGGTTCTCAGTTGATGGAGAACCTTCTGCTGAAAGGCATACATCTTCTTCCTTTAATGAAATAACTATTTCAAGAATAGATGCTAGATAG 2481 0.3603 MAIILHTLPLITKLLLVLLLLLFSKISSAIDTITQSQPLSDGSTLVSKGDIFELGFFNLGNSTNRYVGIWYKNIPVRRVVWVANHDNPIKDKFSKLIISSNGNLVLLNQNQTLLWSTNITTKVAISSPIVQLLDDGNLVLKNKTRNNIDENFLWQSFDYPSDTILPGMKAGWDKKKGLDRNIVAWKNWDDPSSSDYTSAMVLTPNPESFIWKGSTKVYRTGPWTGPRSSGIVGLTENPIYNYEFVNNEDEVYYLFTLKNSSVVSIVVLNQTTSVRQRLIWISESKTWNAYLTLPQDNCDVYNICGKNGLCTLNESPICQCLDGYKPKSPQQWNATDWRQGCVRNGNWSCGVKNRDGFKRIAGMKLPDTTYSWIDEKMTLEKCKAKCLENCSCSAYSNLDSTGTGLGCSIWFGDLIDLRVSQSGQDLYIRIDSSDIDDKNGQIKIVLAVSIPVSVVLVMVLVFTYIYVTKAKYKRKIEIATTSEAKEDKYDDFELPIFDQATILKATNNFSIDNKLGEGGFGPVYKGTLLDGQEIAVKRLSQSSGQGLKEFKNEVILCAKLQHRNLVKVVGCCIEGEEKMLIYEYMSNKSLDSFLYDPFQSKLLDWSTRFNILFGIARGLLYLHEDSRLRIIHRDMKASNILLDDDMNPKISDFGMARMCGGDQIEGRTNRIVGTYGYMAPEYVIDGLFSIKSDVFSFGVLLLEIISGKKNRADSYQEHDQNLIGYAWRLWKEGKPLNLVDDYLRNSCIESEALRCIQIGLLCLQHHPDDRPNMTFVVVMLSSESTLPKPKEPGLLVTRFSVDGEPSAERHTSSSFNEITISRIDAR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01606 826 SMART blect_4 36 160 IPR001480 -
Trre6g01606 826 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Trre6g01606 826 Pfam Domain of unknown function (DUF3403) 781 826 IPR021820 GO:0004674
Trre6g01606 826 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01606 826 Gene3D Transferase(Phosphotransferase) domain 1 585 790 - -
Trre6g01606 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Trre6g01606 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 771 - -
Trre6g01606 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 474 584 - -
Trre6g01606 826 Pfam Protein tyrosine and serine/threonine kinase 510 778 IPR001245 GO:0004672|GO:0006468
Trre6g01606 826 ProSiteProfiles Protein kinase domain profile. 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01606 826 Pfam D-mannose binding lectin 79 186 IPR001480 -
Trre6g01606 826 Gene3D Phosphorylase Kinase; domain 1 468 584 - -
Trre6g01606 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Trre6g01606 826 Gene3D - 24 157 IPR036426 -
Trre6g01606 826 CDD STKc_IRAK 515 780 - -
Trre6g01606 826 SMART ntp_6 352 430 IPR003609 -
Trre6g01606 826 SUPERFAMILY Protein kinase-like (PK-like) 493 787 IPR011009 -
Trre6g01606 826 CDD B_lectin 36 160 IPR001480 -
Trre6g01606 826 Pfam PAN-like domain 349 417 IPR003609 -
Trre6g01606 826 CDD PAN_AP_plant 348 430 - -
Trre6g01606 826 ProSiteProfiles PAN/Apple domain profile. 349 431 IPR003609 -
Trre6g01606 826 ProSiteProfiles EGF-like domain profile. 294 330 IPR000742 -
Trre6g01606 826 Gene3D Hepatocyte Growth Factor 348 428 - -
Trre6g01606 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 191 IPR036426 -
Trre6g01606 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Trre6g01606 826 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Trre6g01606 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01606 Trre-Chr6 13342046 13346840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01606 436 795 Receptor kinase-like Gene Family AT4G23190 51.639 3.73e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre6g01606 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01606 - - tpra:123915292 1286.17