Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01605 ATGGCTGAACCAAACATGCAAATGACACTATCAAGTTCTTCAAGTGACTCATCTGACCATGAAAATGAAACACCTTTCACCACCACAACAAACCAACAACCAACCACCATGGTCGGTGGTTCTTCAGCTTACCAACAACAAACACCAACCTCAGTCAATTCACCAAACCAACAGCCCTTTTCACCACCATACAAAAAGCCACGTGGCAGACCACCAGGTTCAAAAAACAAACCAAAACCACCATTAGTAATAACACAAGACAATGAACAAGCTATGAAACCAGTAGTTATTGAAGTAGCTGCTGGTACTGATGTTCTTGAAGCTATTATACAATTTGCTGTTCGTTCTACTTCATGTCTTACTGTTCTTAGTGGTTCTGGTACCATTGCTGTTGCTACTCTTCATTACCCTCTTTGTCGTTCACCTGCTTTTACTCTTCATGGTCCTTTTTCATTGATGAATTTGACTGGTACTTTTTTGTATCCTCCACCTCCACCACCACCACCACCACCTCCTCCTGTTTCTCTTTCACTTCCTATTGGTCCTTCAACAAATGTTAATCCGGTCGAGTCGATGCCGGGGGCTTTGAGTTTTGGTATTACTCTTGCTGGTTTACAAGGACAAGTTTTTGGTGGGATTATTGGTGGAAAAGTTATTGCTGGTGGTGAAGGTGTTAAGGTTACTGTTTCTTTGTTTAAGAATCCTGAATTTCATAGGGCTGGTGGTGTTATTCTTGGAGCTGATGATGATGATGATGCTGATGATGCTGGTGGTGGTGGTGATAATAATGGTAATGGAAATGGTGGTGGTGATCAAGGTGCTAGTGGTAGTGGTGGTGGTGGTCGTGGTGGAAGTGATCAGAATGTGTCTGGTTTCAATGAGCATAATCCAATGCCATCGAATCTAGCACATTCTGATCAAAACTTCGTGCCGTGGAACCACCCTTGA 948 0.4283 MAEPNMQMTLSSSSSDSSDHENETPFTTTTNQQPTTMVGGSSAYQQQTPTSVNSPNQQPFSPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVAAGTDVLEAIIQFAVRSTSCLTVLSGSGTIAVATLHYPLCRSPAFTLHGPFSLMNLTGTFLYPPPPPPPPPPPPVSLSLPIGPSTNVNPVESMPGALSFGITLAGLQGQVFGGIIGGKVIAGGEGVKVTVSLFKNPEFHRAGGVILGADDDDDADDAGGGGDNNGNGNGGGDQGASGSGGGGRGGSDQNVSGFNEHNPMPSNLAHSDQNFVPWNHP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01605 315 MobiDBLite consensus disorder prediction 60 78 - -
Trre6g01605 315 SUPERFAMILY Formin homology 2 domain (FH2 domain) 163 173 - -
Trre6g01605 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 239 - -
Trre6g01605 315 MobiDBLite consensus disorder prediction 1 59 - -
Trre6g01605 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 93 222 IPR005175 -
Trre6g01605 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 312 IPR014476 GO:0003680
Trre6g01605 315 CDD DUF296 93 221 IPR005175 -
Trre6g01605 315 MobiDBLite consensus disorder prediction 1 85 - -
Trre6g01605 315 PIRSF ESCAROLA 2 186 IPR014476 GO:0003680
Trre6g01605 315 PIRSF ESCAROLA 176 313 IPR014476 GO:0003680
Trre6g01605 315 MobiDBLite consensus disorder prediction 243 315 - -
Trre6g01605 315 MobiDBLite consensus disorder prediction 281 315 - -
Trre6g01605 315 Gene3D - 92 249 - -
Trre6g01605 315 ProSiteProfiles PPC domain profile profile. 89 235 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01605 Trre-Chr6 13281057 13282004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01605 65 281 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 39.556 2.98e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01605 - - tpra:123915288 373.629