Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01602 ATGGCTAGACAAAGGGTGAAACTTGCTTTCATTGTTAATGATGCTGCAAGAAAAGAGACATATAAAAAAAGGAGCAAGAATGTATTGAAAAAAGTTAATGAACTAAGCACCCTATGCGGAATAGAAGCATGTGCTATAGTCTATGGTCCGTATGAGCCAGAACCTGAGATTTGGCCACCATCCCCTTCAGATGTCCAAAAGGTGGTATCGAAATTCAGAGCAAAACCTGAATTTGAGCAAAGTAAAAAAAAATTGAGTCAAGAGGATTACTTGAAGCAGAGCGTTGTGAAGGCTGAAGACCAACTGATGAGGTTGAGGAAAGAAAACAGACAAACTGAGATGCAATTGTTTATGTATGAATATTTTAAAAGAGGTCAAATTGATCTCAACAATATTTCATTGAATGATTTGAAAGATCTTTCTTGGTTTATTGACCATAATTTGAAGGACATTGGTAGAAGACTGGAAGTAGGGTATACTGATAATGGTCAAGGTCAAATTATGACTGCTCCAAGCCAACTTCAACTCCAAATGACACCACCGCCTCCACCAGCAGCAACAACATCTAGCAATGCTGAAATGGCAATGACGATGAATCATGGCCATGTTGGGATGATTAATGATGACATCATGCAAATGGGGTCGTTTATGGATTTGTTGAATGGGAACGGGGATGAGACAATTCCATCTGGCCAGCGTCATGATGCCAATCTTTAA 717 0.3919 MARQRVKLAFIVNDAARKETYKKRSKNVLKKVNELSTLCGIEACAIVYGPYEPEPEIWPPSPSDVQKVVSKFRAKPEFEQSKKKLSQEDYLKQSVVKAEDQLMRLRKENRQTEMQLFMYEYFKRGQIDLNNISLNDLKDLSWFIDHNLKDIGRRLEVGYTDNGQGQIMTAPSQLQLQMTPPPPPAATTSSNAEMAMTMNHGHVGMINDDIMQMGSFMDLLNGNGDETIPSGQRHDANL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01602 238 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g01602 238 Coils Coil 88 115 - -
Trre6g01602 238 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Trre6g01602 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Trre6g01602 238 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Trre6g01602 238 FunFam agamous-like MADS-box protein AGL80 13 98 - -
Trre6g01602 238 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Trre6g01602 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre6g01602 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01602 Trre-Chr6 13250286 13251002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01602 1 157 Type I MADS-box Gene Family AT5G48670 50.318 8.73e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g01602 SRF-TF 8.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01602 - - gmx:100813231 203.371