Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01600 ATGTCTTTTTTACTCATCAAGATCCAAGACGAACATCAACAACCTCTACCCAACATATTTCACGATCTTTCTATCAAAGATCTGAGTGAAAATGGGAGCGAAAAAGAAGAGAATCACTCTGTTGGCTTTGGAAATCACGGTGCAATTTGCGCCATATGCTTAGATAAGATAGCACTGCAAGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTATTGTGTAACATGCATCCTTCGCTGGGCCACATACAGTCAGAAAGTTACTTGCCCTCAGTGCAAACTTCCATTTGAGTTCCTCACTGTCCATCGCACACTTGATGGAAGTATTCAGGACTACATGGTGGAAGAAAGCGTCTGCCTACTCCTTCGAGCTAAGTGGTTCCAGCCTTTACCGGTTGTTGAAGAGCGTGTGATTGATGAAGATATCTATTTTGAGGAAATAGAAGAAGATTACTATAATCAATACGAAGAAGCTGATGATGATCTAGATGACGAAGTTTACTATGGTGGTTCAACAAGTGTCCGGATTGGCAACCGTAGATGGGGAGACAACGGTTATGTAAGGGCTGGGCGTCAAGAAGCACGACCGGTCCATCGACCAAGTTTCCAGGATTCAGGAGCAAGCTCATCGCGCGAGCCAAAGAAGAAAGAGCAAGAGGAGTCAAAACGTATGACAGGGAGACGGGCGAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCCGCTGAAGCAAAACATCAGCAGCATTTGGCTAGGTTTGTTTCTGTGCTCTGTGAAGCATGTGGGGGAAGCTGTTTTAGAATAATGGCTTTAGTTGGATGA 822 0.4489 MSFLLIKIQDEHQQPLPNIFHDLSIKDLSENGSEKEENHSVGFGNHGAICAICLDKIALQETALVKGCEHAYCVTCILRWATYSQKVTCPQCKLPFEFLTVHRTLDGSIQDYMVEESVCLLLRAKWFQPLPVVEERVIDEDIYFEEIEEDYYNQYEEADDDLDDEVYYGGSTSVRIGNRRWGDNGYVRAGRQEARPVHRPSFQDSGASSSREPKKKEQEESKRMTGRRAKRALKREAADKAAEAKHQQHLARFVSVLCEACGGSCFRIMALVG 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01600 273 Pfam Ring finger domain 50 93 IPR001841 -
Trre6g01600 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 118 IPR013083 -
Trre6g01600 273 MobiDBLite consensus disorder prediction 209 240 - -
Trre6g01600 273 SUPERFAMILY RING/U-box 49 100 - -
Trre6g01600 273 SMART ring_2 50 92 IPR001841 -
Trre6g01600 273 ProSiteProfiles Zinc finger RING-type profile. 50 93 IPR001841 -
Trre6g01600 273 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Trre6g01600 273 MobiDBLite consensus disorder prediction 190 240 - -
Trre6g01600 273 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01600 Trre-Chr6 13242755 13245556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01600 5 235 C3H Transcription Factor Family AT5G12310 54.583 1.57e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01600 - - lja:Lj0g3v0250279.1 338.961