Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01594 ATGGAAGAACCGATTGAGTTGCAATCGGAGGACAATAAAACCTCAATGGATAAAAATAACAAAAGAAAGCTAAAAACACCGGTGCAGCTTATGGCCTTGGAAGATTTTTATAATGATCACAAATACCCCACAGAGGAAATGAAACTTGAACTCGCTAATGAATTAGCGCTCACAGAAAAGCAAATCTCAGGATGGTTTTGTCACAGAAGGTTAAAAGATAAGAGATTGATGAAAGGCGAAGTATGTGCCAATGGACGGCAAGACCGTTCAAGTGGCGTTGTTCAGGATCGTGGCAGTGGACGGCAGGATTCATGTGGAAGTACTAAGCATGGTGACTATAGGTATTCGGAACCCAAAGAGGTTGTGAGTCTTGGCGTCTATAATCATGAATTATCAGTTGCAGATATGAACTATGCACATAAAAACCATTATACAGAAAATGATAGTGAAACAGATAACACATCATCCGAGAGTAGCTCATCTTTGCAAGAACGATTGTTTCTTCAAGGACAGGATCCGTATGATACGGAGCCTTCAAGATATGTAACACCAAATGGATCTCGTCCACCCTTAAATCCCAAGGGATATAAACCATCAGGATATTTAAAAATGAAGGGAGAGATAGAGCATGCTGCTATAACTGCTGTAAAGAATCGGTTGGGAAGGAATTATCTGGAAGATGGTCCACTACTTAATATAGATTTTGATACGATTCCTCCGGGGGCATTTGTGTTTCAAACTGCGAATCCAGTTAATGAACCATACCATGTTGCAAATCCGTCTCTTTCAAGTTTCCCTGAAGTCTCTGCTGCAAAAAGGCAACATAGTCTTAACTCTAAATATGATTTATATTTGAACAAATTAAGTTCCCAAGATTTACAAATGGAAGGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATACCGCCAGCACTCGACTGGGGTAGCACCTGCTTATGATAACACTAGAAATCATAGAATAGGAACTAAACATGTAGTTGAGAGGATGAGTTCTGAATCTGCATCTAGTCCTAGTGATACCGAAGAGAATAACCCGGCGGTTAAGCAGACAAATCCAGTACTACATGATTACAGTAACAGCAATGTGAAAAATGTACAAAGGATTGAATATGTAAAATCTAAACCTTCAAATTCAATACGTAATTCTCGAATTTACGAGGATACTGGAGGAAGAGGGCTTTCTGAAAGAACGGAAGAAAAGTTTAATAGTGGTAGAAAGATTGAAAAACAATATCATGAGCCAGATGGAATAAGAATGCCTTCGAAAAAAACAATGGTTGCAAAGCGAGCGAAAGTTGATTTACTTCATCAATATGATATTAAACAAGCACATGTTGCTGAGATTGAACCAATGAAAACTCAGAGATCTGCTGTGGAGATGCCATCTAGCATTAGTGAGGATGATGAAACTGCAGAAACCAGTTCCTCACTGGATTGA 1473 0.391 MEEPIELQSEDNKTSMDKNNKRKLKTPVQLMALEDFYNDHKYPTEEMKLELANELALTEKQISGWFCHRRLKDKRLMKGEVCANGRQDRSSGVVQDRGSGRQDSCGSTKHGDYRYSEPKEVVSLGVYNHELSVADMNYAHKNHYTENDSETDNTSSESSSSLQERLFLQGQDPYDTEPSRYVTPNGSRPPLNPKGYKPSGYLKMKGEIEHAAITAVKNRLGRNYLEDGPLLNIDFDTIPPGAFVFQTANPVNEPYHVANPSLSSFPEVSAAKRQHSLNSKYDLYLNKLSSQDLQMEGGDFGSLHDSDFQDKKYRQHSTGVAPAYDNTRNHRIGTKHVVERMSSESASSPSDTEENNPAVKQTNPVLHDYSNSNVKNVQRIEYVKSKPSNSIRNSRIYEDTGGRGLSERTEEKFNSGRKIEKQYHEPDGIRMPSKKTMVAKRAKVDLLHQYDIKQAHVAEIEPMKTQRSAVEMPSSISEDDETAETSSSLD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01594 490 MobiDBLite consensus disorder prediction 401 416 - -
Trre6g01594 490 CDD homeodomain 21 75 IPR001356 GO:0003677
Trre6g01594 490 MobiDBLite consensus disorder prediction 88 106 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 468 490 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 340 369 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 171 196 - -
Trre6g01594 490 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre6g01594 490 MobiDBLite consensus disorder prediction 85 113 - -
Trre6g01594 490 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 316 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 339 369 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 144 163 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 7 23 - -
Trre6g01594 490 Gene3D - 9 92 - -
Trre6g01594 490 MobiDBLite consensus disorder prediction 393 416 - -
Trre6g01594 490 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre6g01594 490 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Trre6g01594 490 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g01594 490 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Trre6g01594 490 MobiDBLite consensus disorder prediction 463 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01594 Trre-Chr6 13206620 13211035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01594 6 490 Homeobox Transcription Factor Family AT4G03250 38.961 8.22e-76 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre6g01594 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01594 - - mtr:25488906 645.966