Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01592 ATGTCACGGTCTGATACGATTATGATGACGACTACTTCAACTAATTCGGATCTGAATAGAGCTGGTACAGTTGAAAGAGACATTGAGCAGGCAATTACTGCTTTAAAGAAAGGGGCATATTTGCTTAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCATTTCGGCTTTCTAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCTCGGCCTGCGAAGGAATACCAGTCATTTTCACTCATCTACAATGACAGATCACTGGACCTGATTTGCAAAGACAAAGATGAAGCTGAGGTATGGTTCAGTGGATTGAAAGCATTGATTTCACGGAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGTTAATAGTCCTCGAACATACACTCGAAGAAGTTCTCCCTTACATTCTCCATTTGATAGTAACGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCTCCAGAGAATGGTTTAGATAAAGCATTTTCTGATGCGACTTATTATCCTATTCCTCCAAAGGGTTTCTTTCCGCCAGATTCGGCCGGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTGTGCATGGCCACATGAAGGCGATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCTTCTAGCCAAGGTTCTGCACGTGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGGGTCCACCGAGTTGGGAGTTGTTTTGATGTCAAAATGGATTCTCTATTGCCGAAAGCCTTGGAATCAGCAGTGGTTCTAGATGTACAGAATATTGCTTGTGGTGAGCAACATGTGGCCTTAGTGACGAAACAAGGTGAAATTTTCTCTTGGGGAGAAGAATCGGGAGGCAGGCTCGGGCATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTCATTGAATCTTTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAATATCATAGTTGTGCTGTGACACTTTCAGGAGATCTTTATACATGGGGTGACGGCACTTACAATTATGGTCTTCTGGGACATGGAAACCAGGTGAGTCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGTATACATGTTTCATCTATTTCTTGTGGTCCTTGGCATACTGCTGTTGTAACCTCTTCCGGGAAGTTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTATTTACTTGGGGAGATGGGGACAAAGGTAGACTTGGGCATGGTGACAAGGAATCTAAACTTGTTCCAACCTGTGTTTTAGCCCTTAGCGAACCTAACTTTTGTCAAGTTGCTTGTGGGCATAGTATGACCGTTGCACTTTCTAGAGCAGGTCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACTCGCATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCCTGTGGTGCTTATCACGTTGCAGTTTTGACTTCGAGGACTGAAGTTTACACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGCGATACTGATGATAGAAACTCCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACGAATTTCACTGCTGCCATATGCTTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCGTTCAATTTCAAAAGGAAGCGCCATAATTGTTACAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCTTCAATGTCACCAAATCCCAACAAACCTTATCGTGTCTGTGACAACTGTTTTAACAAAATAAGGAAAGCTACAGAAACTGATGCTTCGTCTCAGTCTTCTATTAGCAGAAGAGGAAGTATTAATCAAGGGTCACTCGAGTCTATTGGTAAGGATGATAAATTGGATTCCAGATCTCAAAATCAATTTTCTAGGTTCTCTTCAATGGAATCCTTCAAACAAGATGACAGAAGATCTTCAAAGAAAAATAAAAAAATGGAATTCAATAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATGGGGAGTAATGCATATTTCTAAATCTTCGAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCAGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGGCGGCCTAGTCCACCACGGTCAACTACTCCAACCCCAACGCTGGGAGGACTGACAACCCCAAAGATAGTTGTGGATGATACAAAGAGGACTAACGACAGCCTCAATCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACTTGACTCGGAAATCCCAGCTTCAAGAAGATGAGTTGGAAAAAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCTCAGTTGAAGGACATGGCTGAGAGGCTGCCTATAGGAGCAGCTAGGAATGTCAGATCACCCTCTAACTCCATTTCCAATGACTTAAGCATTGCTTCCATCGATCGACTGAATATTCAAGCAACAAGCCCAGAATCAGACGTTACTGGATCATATAACCAGTTATTTTCAAATGGATCAAGCACTGTAACCGACCGTTCTGTAGGGCACTGTAAACATAGTCTATCAGATGCAGCTAGCAGAAATGGGAGCAAAACAAAGGATAATGAATCCCGTAACGAGACCGAATGGGTAGAGCAAGATGAACCTGGTGTATATATTACTCTCACTTCCCTGTCAGGCGGTGCAATAGATCTTAAGAGGGTTCGATTCAGTCGCAAGCGGTTTAGTGAGAAACAAGCAGAACATTGGTGGGCTGAGAATCGGATAAGAGTATATGAAAAGTACAACGTGCGCATAATTGACAAGTCGACCATTGGTATTGGGAGTGTGGACCTGGCTCATTGA 3330 0.4348 MSRSDTIMMTTTSTNSDLNRAGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEVNSPRTYTRRSSPLHSPFDSNESLQKDSGDHLRLHSPYESPPENGLDKAFSDATYYPIPPKGFFPPDSAGGSVHSVSSGGSDSVHGHMKAMPMDAFRVSLSSAVSSSSQGSARDDGDALGDVFIWGEGTGDGVLGGGVHRVGSCFDVKMDSLLPKALESAVVLDVQNIACGEQHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHSCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGKLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVLALSEPNFCQVACGHSMTVALSRAGHVYTMGSCVYGQLGNPQADGKLPTRIEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMSPNPNKPYRVCDNCFNKIRKATETDASSQSSISRRGSINQGSLESIGKDDKLDSRSQNQFSRFSSMESFKQDDRRSSKKNKKMEFNSSRVSPVPNGGSQWGVMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDTKRTNDSLNQEVVKLRSQVENLTRKSQLQEDELEKTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPIGAARNVRSPSNSISNDLSIASIDRLNIQATSPESDVTGSYNQLFSNGSSTVTDRSVGHCKHSLSDAASRNGSKTKDNESRNETEWVEQDEPGVYITLTSLSGGAIDLKRVRFSRKRFSEKQAEHWWAENRIRVYEKYNVRIIDKSTIGIGSVDLAH 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Trre6g01592 1109 Gene3D - 26 144 IPR011993 -
Trre6g01592 1109 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 443 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 337 385 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 613 660 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 443 492 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 388 440 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 560 608 IPR000408 -
Trre6g01592 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Trre6g01592 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 482 492 IPR000408 -
Trre6g01592 1109 Pfam FYVE zinc finger 664 730 IPR000306 GO:0046872
Trre6g01592 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 71 946 - -
Trre6g01592 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 737 IPR013083 -
Trre6g01592 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 668 730 IPR017455 -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 612 663 IPR000408 -
Trre6g01592 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 778 796 - -
Trre6g01592 1109 Pfam Unstructured region between BRX_N and BRX domain 962 1029 - -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Trre6g01592 1109 Coils Coil 874 950 - -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 145 201 - -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 150 178 - -
Trre6g01592 1109 Gene3D - 399 502 IPR009091 -
Trre6g01592 1109 Gene3D - 226 398 IPR009091 -
Trre6g01592 1109 Pfam Pleckstrin homology domain 29 135 IPR001849 -
Trre6g01592 1109 SUPERFAMILY RCC1/BLIP-II 274 665 IPR009091 -
Trre6g01592 1109 FunFam PH, RCC1 and FYVE domains-containing protein 1 498 669 - -
Trre6g01592 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 842 869 - -
Trre6g01592 1109 Gene3D - 503 676 IPR009091 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 446 460 IPR000408 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 430 446 IPR000408 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 549 567 IPR000408 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Trre6g01592 1109 PRINTS Chromosome condensation regulator RCC1 signature 607 628 IPR000408 -
Trre6g01592 1109 CDD FYVE_like_SF 673 726 - -
Trre6g01592 1109 SMART fyve_4 662 731 IPR000306 GO:0046872
Trre6g01592 1109 CDD PH_PLC_plant-like 26 136 - -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 1003 1036 - -
Trre6g01592 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 336 IPR000408 -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 736 809 - -
Trre6g01592 1109 SUPERFAMILY FYVE/PHD zinc finger 664 734 IPR011011 -
Trre6g01592 1109 MobiDBLite consensus disorder prediction 736 755 - -
Trre6g01592 1109 Pfam Transcription factor BRX N-terminal domain 925 955 IPR027988 -
Trre6g01592 1109 FunFam Putative E3 ubiquitin-protein ligase HERC1 670 738 - -
Trre6g01592 1109 FunFam PH, RCC1 and FYVE domains-containing protein 1 246 497 - -
Trre6g01592 1109 SUPERFAMILY PH domain-like 27 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01592 Trre-Chr6 13123295 13133063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01592 934 1100 Major Intrinsic Protein MIP AT1G31880 31.088 5.91e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01592 - - gmx:100791947 1882.07