Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01587 ATGGCTAGGAAGAAGGTCAAGCTTGCATACATAACCAACAATTCAAAGAGGAGGGGAACGTTTGAGAAAAGAAAAAATGGTTTAATCAAGAAGGTTAATGAAATAAGCACCCTTTGTGGAATTAAAGCATGTGCTATAATTTTCAATCAAAATGTTCCTCAACCAGAGGTTTGGCCATCACCAAGGGAAGTTCAAAGTGTGTTGTGGAGGTTTAAGAGTTTGTCTGAAATTGAACAAAGGAAAAACATGCTGAATCAAGAGAGTTTCTTGAAGCAAAGGATCGAAAAGGGACAAGAAAAATTAAAAAAACAAAGGAATGAAAACAGAATGAAGGAAATGACCTATCTCATGTTTCAATGTCTTAATGCTGCCCAAACTATTGGCAATGTTGGCATGAATGATGTCAAAGATCTCTCATGGGTGATAGATCAGAACTTGAAACAAATCGAAAGGCGTATCGATGAGACTCAAGCCGAAGTGGTGGTTGAAAATCATACTGAAAATGTGATTGGAATAGAGCAGGGGATGGGGAACAATGTTCATGCAATGCAAAGTCAAGATTGGAGATTGGACTTCAACAACAACAATTTTGGTAATGTGTTGCCATTTGAAAATGGTAATAACGTACCAAATGGTTTATGGTCTAATTAA 651 0.3687 MARKKVKLAYITNNSKRRGTFEKRKNGLIKKVNEISTLCGIKACAIIFNQNVPQPEVWPSPREVQSVLWRFKSLSEIEQRKNMLNQESFLKQRIEKGQEKLKKQRNENRMKEMTYLMFQCLNAAQTIGNVGMNDVKDLSWVIDQNLKQIERRIDETQAEVVVENHTENVIGIEQGMGNNVHAMQSQDWRLDFNNNNFGNVLPFENGNNVPNGLWSN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01587 216 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Trre6g01587 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre6g01587 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 Coils Coil 146 166 - -
Trre6g01587 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g01587 216 Coils Coil 87 114 - -
Trre6g01587 216 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Trre6g01587 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g01587 216 PANTHER MADS BOX PROTEIN 3 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01587 Trre-Chr6 13054333 13056038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01587 1 154 Type I MADS-box Gene Family AT5G48670 53.247 3.04e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g01587 SRF-TF 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01587 - - tpra:123915093 224.557