Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01585 ATGATATTTCAGACTCAATCATGTGCTTTAATTGCAACAATAATATTTGTTCTTGCAACACAAATCATTGTAGGAGTAAATTCCTTTCCAGAATCTGATAAGATAAGAAGTTTACCACAGCAGCCAAAAGTTAAATTCCAACAATATTCTGGTTACATTACAGTTGATGAAGTTCAAAAAAGAGCTTTGTTTTACTATTTTGTTGAAGCTGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGGGCCTGGTTGTTCATCTGTTGGAGCTGGAGCATTTGTGGAGCATGGTCCATTCAAACCAACTGAAAATGGTCTTATTAAAAATAATTACAGTTGGAACAAAGTGGCAAATATGCTCTACTTGGAATCACCTGCTGGTGTTGGTTTTTCCTACTCTGCCAATAAATCATTCTATGGCTATGTCAATGATGAAATGACAGCAAGGGATAATCTTGTGTTTCTGCAACATTGGTTCACAAAATTCCAAGAGTACAAAAACAATGATTTCTTTATCACAGGAGAGAGTTATGCAGGTCATTATGTACCTCAACTTGCACAACTCATTGTTCAAACCAAAAGCAAATTCAATCTCAAAGGGATAGCAATAGGGAATCCTCTTCTTGAATTTAACACAGATTTCAATTCAAGAGCTGAGTTTTTATGGTCTCATGGACTGATATCAGATTCAGCCTATGAATCTTTCACAAAAATATGCAACTATTCTCAAATTAGAAGAGAATATCAAAGTGGAACATTTAGTATTGGTTGTTCAAGAGTGAATAGGCTAGTATCAATGGAGATTGGTAGATATATTGATTCATATGATGTTACACTTGATGTTTGTCTACCAACAGAAAAACAACAGGCATATAGACTGACTCGATTGCAAGAGGGAGAGAAGATAGATGTTTGTGAGGAGGATGAAACAATCTTATACTTGAATAGGAAAGATGTGCAGTTAGCTCTCCATGCTAAGCTTGTAGGCATCCCTGCCTGGTCAACTTGTAGTGGAATTCTTAAATATGACATGCAAAATCTAGAGATTCCAACCATATCAATTCTTGGGAAACTTGTAAAATCAGGTGTAAGAGTTCTAGTATACAGTGGAGATCAAGATTCTGTGATACCTTTACTTGGGACAAGATCTTTAGTAAATGGATTAGCCAAGGACTTTAGGTTGAACACAACAGCTTCCTATAGAGCTTGGTTTAATGAAAGACAGGTAGCTGGATGGACACAGATATATGGTGGTGGTGGTATCTTATCATTTGCAACCATAAGAGGAGCATCTCATGAGGCACCATTTTCACAACCTGGGAGATCATTGGGTCTGCTAAAGTCATTTTTGGAAGGAAAGCCACTTCCAACTATTCTTTGA 1392 0.3685 MIFQTQSCALIATIIFVLATQIIVGVNSFPESDKIRSLPQQPKVKFQQYSGYITVDEVQKRALFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPTENGLIKNNYSWNKVANMLYLESPAGVGFSYSANKSFYGYVNDEMTARDNLVFLQHWFTKFQEYKNNDFFITGESYAGHYVPQLAQLIVQTKSKFNLKGIAIGNPLLEFNTDFNSRAEFLWSHGLISDSAYESFTKICNYSQIRREYQSGTFSIGCSRVNRLVSMEIGRYIDSYDVTLDVCLPTEKQQAYRLTRLQEGEKIDVCEEDETILYLNRKDVQLALHAKLVGIPAWSTCSGILKYDMQNLEIPTISILGKLVKSGVRVLVYSGDQDSVIPLLGTRSLVNGLAKDFRLNTTASYRAWFNERQVAGWTQIYGGGGILSFATIRGASHEAPFSQPGRSLGLLKSFLEGKPLPTIL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01585 463 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Trre6g01585 463 Gene3D - 309 344 - -
Trre6g01585 463 FunFam Carboxypeptidase 28 460 - -
Trre6g01585 463 SUPERFAMILY alpha/beta-Hydrolases 26 461 IPR029058 -
Trre6g01585 463 FunFam Carboxypeptidase 355 456 - -
Trre6g01585 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Trre6g01585 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 443 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 Gene3D - 356 456 - -
Trre6g01585 463 Pfam Serine carboxypeptidase 42 456 IPR001563 GO:0004185|GO:0006508
Trre6g01585 463 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01585 Trre-Chr6 13032702 13036581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01585 317 459 Calmodulin-binding Proteins AT2G22960 28.671 8.37e-13 65.1