Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01582 ATGGAAGGAATAGCAACTGGGTCACATGAAAGAAACGAACTTGTTCGTGTTAGAAATGGTTCAGCTTCTGGGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGATACTGTTGGATTGACAGCAACTGGCGATGTCTTCATTGCTTGCCACGAGTGTGGCTACCCACTTTGTCATCCTTGTTTTGAATACGAGCGAAAAAACGGCCAATCATGTCTACAATGCAAGACTAAATACAAAAGTCACAAAGAAGGTCCTCAAGTGAAGGGAGACGATGATGATGAAGATGATCTGAGGAATGAGGTCAAGTATGGTCAAGGAAATAATTCTAAGACAGGATGGCAATGGGACGAAGATGCTGACCTCTCTTCATCTTCCGGACATGATTCTCAGTTACAAAATCCCCATCTCACAAATGGACAGCTGATGTCTGGTGAGATTCTAGGTGCTACTTCTGATACTCAATCTGTGCAAACTACATCAGGTCCTTTGGGTCAATCCGAAAATGTTCACTCACGACCCTATGTTGATCCAAAGCAACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTGCCAGAGATGGGAGGTGAATCTGCCGGAACCTCAGCCCCACGTAAAGGCGCCGGTTCTACTGCAGGTCCTGAACGTGCTCAGGGGGCTGGAGAGGGTCAAAAGAAGAGAGGAAGAAGCCCAGCCGACAAAGAAAGCAAACGACTAAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAAACAAGAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCCACTTTGCAAAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACAACAGCAAGCAGAAGAGGGACCAACGGTGGTGCCAACAATGCTGAATGA 960 0.4469 MEGIATGSHERNELVRVRNGSASGSKPLKNLNGQICQICGDTVGLTATGDVFIACHECGYPLCHPCFEYERKNGQSCLQCKTKYKSHKEGPQVKGDDDDEDDLRNEVKYGQGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLTNGQLMSGEILGATSDTQSVQTTSGPLGQSENVHSRPYVDPKQPGLESDEEIRRVPEMGGESAGTSAPRKGAGSTAGPERAQGAGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGTNGGANNAE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01582 319 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 157 314 IPR044280 GO:0000981|GO:0045944
Trre6g01582 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 241 304 IPR004827 GO:0003700|GO:0006355
Trre6g01582 319 FunFam Transcription factor HY5 262 303 - -
Trre6g01582 319 Coils Coil 238 307 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 87 144 - -
Trre6g01582 319 CDD bZIP_HY5-like 244 295 - -
Trre6g01582 319 Pfam Zinc-binding RING-finger 26 101 IPR027934 -
Trre6g01582 319 MobiDBLite consensus disorder prediction 226 262 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 185 199 - -
Trre6g01582 319 CDD mRING-HC-C4C4_CesA 34 83 - -
Trre6g01582 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 107 IPR013083 -
Trre6g01582 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 246 261 IPR004827 GO:0003700|GO:0006355
Trre6g01582 319 SMART brlzneu 239 303 IPR004827 GO:0003700|GO:0006355
Trre6g01582 319 SUPERFAMILY Leucine zipper domain 243 301 IPR046347 GO:0003700|GO:0006355
Trre6g01582 319 Pfam bZIP transcription factor 240 301 IPR004827 GO:0003700|GO:0006355
Trre6g01582 319 Gene3D Single helix bin 262 303 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 158 173 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 1 16 - -
Trre6g01582 319 SUPERFAMILY RING/U-box 22 101 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 108 144 - -
Trre6g01582 319 MobiDBLite consensus disorder prediction 158 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01582 Trre-Chr6 13022131 13025636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01582 3 186 Glycosyltransferase AT4G32410 56.915 2.59e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g01582 zf-UDP 4.1e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01582 K10999 - aprc:113855639 520.005