Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01579 ATGTTTAGTGGAAACTTGAGTTGGGAATTCAACAATTTGAAAGAGCTTGAAGTGTTGGATATTTACAACAATGGTTTCAATGGTTCACTTCCAAAGAATGTTACTCAAATGTTTAAGCTTAAGCATTTGAATTTTGGAGGGAATTATTTTAATGGAAAAATTCCTACAAGTTATGGTGAAATGAAAGAGCTTAATTTTTTGTCACTTGCTGGAAATGATTTGAGTGGTGAGATACCTAGTGAGCTTGGAAATTTGACTAGTTTGGAATATCTTTATTTAGGTTATTTCAATCAATTTGATGGTGGAATTCCAAATGAGTTTGGTAAGTTGATTAATTTGGTTCATTTAGATTTAGCAAGTTGTTTCTTGAAAGGTTCAATTCCAAATGAGTTAGGTAAACTTTACAAGTTAGATACACTTTTCTTGCAAAAAAATCAATTAATTGGTTCGATTCCACCCGAGTTAGGTAACTTGAGTAGATTAACCGCTCTTGATTTATCACTCAATAACCTAACAGGTGGAATCCCGAATGAATTCTCGAACCTTCAACAACTTTCTCTTTTGAACCTTTTTATCAACAAATTTCACGGCGAAATACCTGAGTTTATTTCCGAGCTTCCTAAATTGGAAGTACTTAAGCTTTGGAGGAATAACTTCACTGGAGTTATTCCTTCAAAGCTAGGTCAGAATAGAAGATTAACCGAACTTGATTTGTCGACAAATAAACTCACCGGAATATTGCCAAAATCACTTTGCCTTGGAAAAAGATTAAAAATCTTGATCTTGCTTAACAACTTTTTGTTTGGTTCTTTGCCTAATGATCTTGGTCAATGCTACACACTTCAAAGAGTTAGAATTGGTCAAAACTACTTCACTGGTTCAATTCCACATGGTTTTCTTTATTTACCAAATTTATCTCTATTGGAACTACAAAACAATTATCTCAATGGTGTGATTCCAAAGCAAAAAGCCAAAAACACAACAAAATCCAAATTAGAACAATGTAATCTATCAAACAATAGATTATCAGGTTCTTTACCAACTTCAATTGGAAATTTTCCAAATTTGCAAATTCTTCAGCTTAGTGGAAACAGATTCTCAGGTGAAATTCCATCAGATATAGGAAAACTCAAAAAAGTGCTTAAGTTAGATATAAGTAGAAACAAATTTTCAGGTACTATACCTATTGAGATAGGTAAATGTACCTTACTAACTTATTTAGATTTGAGCCAAAACAAATTATCAGGTCCTATTCCAATTCAACTTGCTCAAATTCATATACTAAACCATCTTAATGTCTCATGGAATCACTTAAGCCAAAATCTTCCTAAGGAGTTAGGTGCCTTAAAAGGCTTAACTTCAGCTGATTTCTCTCATAATAACTTCTCCGGTTCGATACCAGAAGGAGGACAATTCTCAACTTTTAAGTCAACTTGTTTTGAAGGTAATTCTCAACTATGTGGATATGAGTCCAATCCATGCAAAATTTCATCGACGAATGTATTGGAATCGCAACAAAAAAACAGTTCAAGAAATGGTTTTCGTGGAAAGTTTAAGCTTGTTTTCGCGTTGGCGTTATTGTTATGTTCATTGGTTTTTGCTATATTTGCTATCATCAAAAGTAGAAAATCAAGGAGGAGGAGTCACTCGAATTCGTGGAAGTTAACAGCATTTCAAAAAATGGAATACGGAAGCGAAGAAATCATAGGTTGTATAAAGGAAAGTAATGTGATAGGAAAAGGTGGAGCTGGTGTTGTGTACAAAGGAACAATGCCAAATGGAGATGAAATCGCGGTGAAGAAATTGTTAGGAATAAACAATGGTTCATCTTCTCATCAAGATAATGGTTTTTCAGCTGAGATTAAGACATTAGGTAGAATAAGACATAGATATATTGTTAGGTTGGTTGCATTTTGTTCAAACAAAGAAACAAATTTGCTTGTTTATGATTATATGGAAAATGGCAGTCTTGGTGAAGTTTTGCATGGAAAAAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCTGTTGAAGCTGCTAAAGGATTAAGTTATTTGCATCATGATTGTTCACCTTTGATTATTCATAGAGATGTTAAGTCAAATAATATTTTGTTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTATGCAAGATAATGGAAATTCTGAATGCATGTCTTCTATTGCCGGTTCTTATGGATATATTGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGTGATGTATATAGTTTTGGAGTGGTTCTACTAGAGCTCATAACAGGAAAAAGGCCAGTTGGAGATTTTGAGGAAGAAGGATTAGACATTGTTCAATGGACAAAAATGAAAACCAATTGGAACAAAGATATGGTGATTAAGATCCTTGATGAGAGGCTACCTCAAATTCCTTTAGATGAAGCAAAGCAAGTGTTTTTTGTTGCCATGTTATGTGTTCATGAACATAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTTACACAAGCAAAGTAA 2553 0.338 MFSGNLSWEFNNLKELEVLDIYNNGFNGSLPKNVTQMFKLKHLNFGGNYFNGKIPTSYGEMKELNFLSLAGNDLSGEIPSELGNLTSLEYLYLGYFNQFDGGIPNEFGKLINLVHLDLASCFLKGSIPNELGKLYKLDTLFLQKNQLIGSIPPELGNLSRLTALDLSLNNLTGGIPNEFSNLQQLSLLNLFINKFHGEIPEFISELPKLEVLKLWRNNFTGVIPSKLGQNRRLTELDLSTNKLTGILPKSLCLGKRLKILILLNNFLFGSLPNDLGQCYTLQRVRIGQNYFTGSIPHGFLYLPNLSLLELQNNYLNGVIPKQKAKNTTKSKLEQCNLSNNRLSGSLPTSIGNFPNLQILQLSGNRFSGEIPSDIGKLKKVLKLDISRNKFSGTIPIEIGKCTLLTYLDLSQNKLSGPIPIQLAQIHILNHLNVSWNHLSQNLPKELGALKGLTSADFSHNNFSGSIPEGGQFSTFKSTCFEGNSQLCGYESNPCKISSTNVLESQQKNSSRNGFRGKFKLVFALALLLCSLVFAIFAIIKSRKSRRRSHSNSWKLTAFQKMEYGSEEIIGCIKESNVIGKGGAGVVYKGTMPNGDEIAVKKLLGINNGSSSHQDNGFSAEIKTLGRIRHRYIVRLVAFCSNKETNLLVYDYMENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLSYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFMQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVIKILDERLPQIPLDEAKQVFFVAMLCVHEHSVERPTMREVVEMLTQAK 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01579 850 Gene3D Ribonuclease Inhibitor 100 253 IPR032675 -
Trre6g01579 850 Gene3D Phosphorylase Kinase; domain 1 539 651 - -
Trre6g01579 850 Pfam Protein tyrosine and serine/threonine kinase 574 846 IPR001245 GO:0004672|GO:0006468
Trre6g01579 850 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 652 850 - -
Trre6g01579 850 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 210 498 - -
Trre6g01579 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Trre6g01579 850 SUPERFAMILY L domain-like 232 491 - -
Trre6g01579 850 Gene3D Ribonuclease Inhibitor 254 329 IPR032675 -
Trre6g01579 850 Gene3D Ribonuclease Inhibitor 330 371 IPR032675 -
Trre6g01579 850 Pfam Leucine Rich repeat 400 416 IPR001611 GO:0005515
Trre6g01579 850 Pfam Leucine Rich repeat 229 245 IPR001611 GO:0005515
Trre6g01579 850 ProSiteProfiles Leucine-rich repeat profile. 232 253 IPR001611 GO:0005515
Trre6g01579 850 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 10 97 - -
Trre6g01579 850 PRINTS Leucine-rich repeat signature 302 315 - -
Trre6g01579 850 PRINTS Leucine-rich repeat signature 233 246 - -
Trre6g01579 850 SMART LRR_typ_2 231 253 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 425 449 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 353 377 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 134 158 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 206 230 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 13 37 IPR003591 -
Trre6g01579 850 SMART LRR_typ_2 61 85 IPR003591 -
Trre6g01579 850 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 541 651 - -
Trre6g01579 850 Pfam Leucine Rich Repeat 112 134 IPR001611 GO:0005515
Trre6g01579 850 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515
Trre6g01579 850 ProSiteProfiles Protein kinase domain profile. 572 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01579 850 Gene3D Transferase(Phosphotransferase) domain 1 652 850 - -
Trre6g01579 850 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 98 203 - -
Trre6g01579 850 Gene3D Ribonuclease Inhibitor 372 495 IPR032675 -
Trre6g01579 850 Gene3D Ribonuclease Inhibitor 1 99 IPR032675 -
Trre6g01579 850 SMART serkin_6 572 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01579 850 SUPERFAMILY Protein kinase-like (PK-like) 564 846 IPR011009 -
Trre6g01579 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 243 848 - -
Trre6g01579 850 SUPERFAMILY L domain-like 22 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01579 Trre-Chr6 13002873 13006901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01579 1 848 Receptor kinase-like Gene Family AT5G65700 58.068 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g01579 PK_Tyr_Ser-Thr 9.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01579 - - gmx:100815103 1317.37