Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01578 ATGACAACCACGATTCTCCGAAGATCTTCTTCCATATTTTCACGGCGTTTCTTCGCCGCCATTACTTCCGTCGAACTACTTCCAATCCGCCACCGTAGTATCCCATTGTCTTCCGCCGTCTACGGCAAAGGAGATAGACTGTTTCACGCGAAATCTGGACCGTTGAACTTTCACTCGTCGCTGGTTTCTCGTGGTGCGCAACTTGCTGTGGATTACGATGACGCGCAACACGATGAAGGTTTCAGTAGTGGTAATGGTGATGAAGGACTTGAAATCGCGAAGCTTGGAATTTCTAAAGAGATCGTTAATGCTCTTGCAAAGAAAGGGATCGCGAAACTCTTTCCCATTCAGAGAGCTGTACTGGAACCTGCGATGCAAGGGAGGGATATGATTGCTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGATAAGATTATTAAGTTTAATGCTAAAAATGGGAAAAGAAGGGATCCTATGGCTCTGGTGTTGGCACCGACCAGAGAACTTGCACGACAAGTTGAAAAGGAATTCAACGAGGCTGCTCCTAACTTGGAAACAGTTTGTCTTTATGGGGGTATGCCTATTCAGCAACAAATCAGTCAACTTGGTGGTGGTGTAGATATTGTAGTTGGCACACCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCACTGAGATTGAAGGATGTTAGTTATGTTGTTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGATTATCTTACAGAAGTTGCCTTCAAAACGTCAAACTCTTATGTTCTCAGCAACAATGCCTTCTTGGATAAAGAATATTACACGCAATTACCTAAACAAACCCTTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTTCATCTAACGCCTATTCTAAAGCAGGAATTCTTGCACCTCTTATAAAAGAACATGCTAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGACTATCGCATATAATGGCAAAAAGCCTTAAATGTGAGGCCTTGCATGGAGATATTGCACAAACTCAGAGAGAAAGAACTCTCACTGGCTTTAGAAACAGTTATTTCAATGTTTTAGTGGCAACTGATGTTGCTTCCCGTGGGCTTGATATACCAAATGTTGATCTTGTAATCCATTATGAACTTCCGAATAATTCAGAGATATTTGTTCATCGATCTGGAAGAACAGGACGCGCTGGGAAGAAAGGAACTGCTATTCTTGTCTACACAGAAAATCAATCCAGGGCTGTAAAGACGATTGAGCGAGATGTTGGATGTACATTCAAAGAGTTACCTAAGATTGCTGTTGAAAGTGGATCAGCCAACATGTTTGACAGCATGAGTGGTGGTCGATATGGCTCTTCGGGAGGTAGGGATCGTCGATCAGGCGGCACAGGTTTTGGTGGTAGTTCTGGATCTGGCCGGACCGGCTATGGGAAATCCAGTGGTTTTGGTGGCTCTAGTTCAAGTCAGTCAAGAGGGGGGTTTGGGGAGTTTTCTGGTAAATCAGATAAATACGGCAGTGGAGGATTTAACAGTTCTGGCCGTTCCAGTGGCTTTGGAAATTTTGGCTCAGGCATTCTTCCTAATCGCCTCTTATCACTTGATATGGAGAAAGAAAGTGGAGCGGGAGCGACGTATCTTGTGCTGCACGTTCCAGCCTCTACCATGCACTTGTTTGGATTAGTTTCATTTGTTCTCTTTTAA 1794 0.4359 MTTTILRRSSSIFSRRFFAAITSVELLPIRHRSIPLSSAVYGKGDRLFHAKSGPLNFHSSLVSRGAQLAVDYDDAQHDEGFSSGNGDEGLEIAKLGISKEIVNALAKKGIAKLFPIQRAVLEPAMQGRDMIARARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPMALVLAPTRELARQVEKEFNEAAPNLETVCLYGGMPIQQQISQLGGGVDIVVGTPGRVIDLLKRGSLRLKDVSYVVLDEADQMLQVGFQEAVEIILQKLPSKRQTLMFSATMPSWIKNITRNYLNKPLTIDLVGDSDQKLADGISLYSISSNAYSKAGILAPLIKEHAKGGKCIVFTQTKRDADRLSHIMAKSLKCEALHGDIAQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVYTENQSRAVKTIERDVGCTFKELPKIAVESGSANMFDSMSGGRYGSSGGRDRRSGGTGFGGSSGSGRTGYGKSSGFGGSSSSQSRGGFGEFSGKSDKYGSGGFNSSGRSSGFGNFGSGILPNRLLSLDMEKESGAGATYLVLHVPASTMHLFGLVSFVLF 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01578 597 MobiDBLite consensus disorder prediction 475 528 - -
Trre6g01578 597 Pfam DEAD/DEAH box helicase 114 283 IPR011545 GO:0003676|GO:0005524
Trre6g01578 597 Pfam Helicase conserved C-terminal domain 323 429 IPR001650 -
Trre6g01578 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 295 IPR014001 -
Trre6g01578 597 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 91 463 - -
Trre6g01578 597 SMART ultradead3 109 312 IPR014001 -
Trre6g01578 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 449 IPR027417 -
Trre6g01578 597 MobiDBLite consensus disorder prediction 495 526 - -
Trre6g01578 597 SMART helicmild6 349 429 IPR001650 -
Trre6g01578 597 CDD SF2_C_DEAD 321 438 - -
Trre6g01578 597 Gene3D - 91 299 IPR027417 -
Trre6g01578 597 Gene3D - 312 475 IPR027417 -
Trre6g01578 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 468 IPR001650 -
Trre6g01578 597 CDD DEADc 101 296 - -
Trre6g01578 597 FunFam ATP-dependent RNA helicase RhlE 82 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01578 Trre-Chr6 12988313 12993469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01578 81 461 Eukaryotic Initiation Factors Gene Family AT3G19760 33.161 2.19e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01578 - - gmx:100802553 706.827