Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01575 ATGAATTCAAGATACCGGAATGAAAACTTGGACAGATTCATCCCAAATCGATCAGCCATGGATTTCGATTACGCTCACTGTATGCTTACTGAACCCTACCGGAAAAAGAATAACTCATCGTTGATCACTACACCGTCTAGCGAAGCCTACCGGAAAGCACTCGCCGATGCTGCTAATTTACCAACTAGAATCTTAGCCTTCCGCAACAAACCACCAAACCCTAGAAATGTTGTTCTTCCCCTTTCTCCTCCTCAATCCAAACCCCCTAAACCTAAACGATACATTCCTCAGAATTCTGAGAGGACTTTGCAAGCACCTGGAATGTTGGACGATTTCAGCTTGAATTTATTAGATTGGGGTAAACGTAATGTAGTTAGTATTGCACTTGACACTATGGTTTTACTTTGGAATCCTTCAGACAAATCCTGTTCAGAAATTGTGGATGATGATGATGAAGATGGTTTTATTACAAGTGTTTGCTGGAACCCAGATGGACGCCATATAGCCATTGGTTTGGATAATTCCCTTGTCCAGATTTGGGATACGTTTTTTTCTAGAAAGGTAAGGACATTGAGGGATGGACACAGAGGAAGTGTCGGTTCATTGGCTTGGAACGGTCCTATTCTAACTACAGGAGGAACTGACGGGAAAATAGTAAATCATGATGTTAGAGTGAGATCTCACGTGGTTGGAAGTTACAGGGGACACCGACAAGGGGTTTGTGGGCTCAAGTGGTCACCATCAGGTTTGAGGAACACACGGCTTATGTCAGGGCACTGGCTTGGTGATCGCAGAATTCTGATTGAGCTGACGAAGGTTGGAGGAATTCAAAGAAACTGGAACCTGCCAAAGGCACTTTCTTTTGATCTGAGAAAAATGGCAATAGTAGTAGTCTCTGCAGATGGGTGTACCGTGGCAACTGCAGCTGCGGATGAGACTGAGATTTTGGAATGTCTTTGGAACCCCAACAGCAGCACCAAACACAAATAA 990 0.4394 MNSRYRNENLDRFIPNRSAMDFDYAHCMLTEPYRKKNNSSLITTPSSEAYRKALADAANLPTRILAFRNKPPNPRNVVLPLSPPQSKPPKPKRYIPQNSERTLQAPGMLDDFSLNLLDWGKRNVVSIALDTMVLLWNPSDKSCSEIVDDDDEDGFITSVCWNPDGRHIAIGLDNSLVQIWDTFFSRKVRTLRDGHRGSVGSLAWNGPILTTGGTDGKIVNHDVRVRSHVVGSYRGHRQGVCGLKWSPSGLRNTRLMSGHWLGDRRILIELTKVGGIQRNWNLPKALSFDLRKMAIVVVSADGCTVATAAADETEILECLWNPNSSTKHK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01575 329 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 190 IPR001680 GO:0005515
Trre6g01575 329 Pfam Anaphase-promoting complex subunit 4 WD40 domain 148 205 IPR024977 -
Trre6g01575 329 SUPERFAMILY WD40 repeat-like 120 312 IPR036322 GO:0005515
Trre6g01575 329 MobiDBLite consensus disorder prediction 76 91 - -
Trre6g01575 329 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 6 249 IPR033010 GO:0010997|GO:0097027|GO:1904668
Trre6g01575 329 SMART WD40_4 139 181 IPR001680 GO:0005515
Trre6g01575 329 SMART WD40_4 184 222 IPR001680 GO:0005515
Trre6g01575 329 SMART WD40_4 226 272 IPR001680 GO:0005515
Trre6g01575 329 Gene3D - 60 268 IPR015943 GO:0005515
Trre6g01575 329 MobiDBLite consensus disorder prediction 69 96 - -
Trre6g01575 329 Pfam WD domain, G-beta repeat 230 268 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01575 Trre-Chr6 12981985 12984742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01575 122 286 U-box Gene Family AT2G33340 26.816 8.69e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01575 K03363 - gmx:100784841 305.064