Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01566 ATGAACAACACTTTTCCTGAATGGAATTTTGGGAGTGATACTTTTGTCACCAATCAAAAGAAGCAACCTATGGGGCTAGACCATGAACTTATGGAGCTTCTATGGCAGAATGGACAAGTTGTATTACATAGCCAAACAAATAAGAAACCACTTATGAATACAAATTCAAACACTTCAAGACACAATCTTCAATCAACAACAACAGTAAGTAACTTGATTCAAGCTGATGAAACAGTTTCATGGATCCAACAATACCCTCTTGAGGATCCACTTGAACAAGAATTATGTTCAAATCTATTAAATGAACTTCCACCTTGTGATGTTGAGTCTTACAACTCACAAACAACGGATACGAAACCGCCTTTTGTTGAGGAATTCTCGACAATTCCTATGCCGGCTCCAAGATTTCATCATCATGGCCCCGATACATCGCAAAGAAATATTGATTTGTGTGGAACGAATAAGGTCGTAAATTTTTCTCATTTTTCAAGACTACCTAATGTTTCTTTAGCATCTTCTAAGGGCGATGCAAAGTTTAGAGACAAAGTTACGGGTAATAATTTGTCGCAATGTGATATTAGAGAGTGTTCGACAATGACAGTTGGTTCGAGTTATTGTGGAAGCAATCACGTCCAACAAGATCCGGATGTAAGCAGGGTATCGAGCAACGGTGTTTGGACTACTATATCTGCCGAGCAGGAAATAATCAAAGATGATGTTCATAAAACAATTCCTCGGCATGAGAAAGGGAAATCGGAGATGCTTGAACCGGTGGTTACTTCATCTTCTGGTGGTTCGGGCAGTAGCCTTGGAAAAACTTGCTCCTTATCTACAAGAAGCCACGGACAAAAGAGAAAAGAGATGGACGTTGAAGACTCAGTCGAACAAAGTGAGGACACGGAATTTAAACCAGCCGTGCGAAAGAAGACATCTCAGAGGTCAGGGTCAGCTCGAAGGAACCGGGCTGCTGAAGTACATAATCTTTCAGAAAGGAGGCGAAGAGACAGGATTAATGAGAAGATGAAAGCGTTGCAACAGCTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAAGCGATTGATTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCCGGCATGCAACCAATGATGCTACCAGCATATCAACAATATATGTCACAGATGAGTATGGGAATGACTACGCCTTCATTTCCTCCGCTTCAAAATCCGATGCAAGTACCGAGAATGCCTCTTGATCCATCCGTATCTTCGCCTCAGACACCAAATCAGACATTAATGTGCCAAAATCCTCTTTTAGGTGCCTTTAATTATCAAAATAAGATACAAAATCCAGCTCTTTCAGAGCAATACGCGCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATGATTCCAAGCAGCACTAGTAGTGGACCAATGAATGGAGCTGAAAACATTAATGATGCTGTGATTGGCAAAATGGGTTGA 1554 0.406 MNNTFPEWNFGSDTFVTNQKKQPMGLDHELMELLWQNGQVVLHSQTNKKPLMNTNSNTSRHNLQSTTTVSNLIQADETVSWIQQYPLEDPLEQELCSNLLNELPPCDVESYNSQTTDTKPPFVEEFSTIPMPAPRFHHHGPDTSQRNIDLCGTNKVVNFSHFSRLPNVSLASSKGDAKFRDKVTGNNLSQCDIRECSTMTVGSSYCGSNHVQQDPDVSRVSSNGVWTTISAEQEIIKDDVHKTIPRHEKGKSEMLEPVVTSSSGGSGSSLGKTCSLSTRSHGQKRKEMDVEDSVEQSEDTEFKPAVRKKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIDYLKSLQLQLQVMWMGSGMQPMMLPAYQQYMSQMSMGMTTPSFPPLQNPMQVPRMPLDPSVSSPQTPNQTLMCQNPLLGAFNYQNKIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQTVQNSQTMIPSSTSSGPMNGAENINDAVIGKMG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01566 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Trre6g01566 517 Gene3D - 316 377 IPR036638 GO:0046983
Trre6g01566 517 MobiDBLite consensus disorder prediction 249 325 - -
Trre6g01566 517 Coils Coil 327 347 - -
Trre6g01566 517 MobiDBLite consensus disorder prediction 280 308 - -
Trre6g01566 517 FunFam Basic helix-loop-helix transcription factor 316 379 - -
Trre6g01566 517 SMART finulus 327 376 IPR011598 GO:0046983
Trre6g01566 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 400 IPR036638 GO:0046983
Trre6g01566 517 CDD bHLH_AtPIF_like 321 383 IPR047265 -
Trre6g01566 517 PANTHER TRANSCRIPTION FACTOR PIF3 17 490 IPR044273 GO:0003700|GO:0006355
Trre6g01566 517 MobiDBLite consensus disorder prediction 256 278 - -
Trre6g01566 517 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01566 Trre-Chr6 12889123 12891999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01566 8 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.585 3.34e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g01566 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01566 K16189 - gmx:100800166 678.707