Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01564 ATGGCTAGGCACAAGGTGAAACTTGCATACATAGAATGTAATGCAAAGAGGAAGGCATCATTCAGAAAGAGAAAAATTGGTATATTGAAGAAGCTTAAAGAAATCACCACCCTATGTGGAATCGAAGCTTGTGCAGTAATCTATGGTAATAACAATCCTCAACCAGAGGTTTGGCCATCAGATTCAGGAGCGAAAAGTGTGTTATCTAGGTTTGTGAATTTGCCTAACCCGGAGAAAAGCAAAAAGACGATGGATCAAGAGGCATTCTTGGGGAAAAGCATCGAGAAAGCCTACGAGCAGCTGAAGAAAGAAAGGGAGGAAACTCGGAAAATTGTTATGACCATAATCATGGATCATTACATTAATACTAAAGAATTTAATGGGAATTCAATGAGCAAATATGATCTTAATGATATGTCGTGTTTTGTTGATGAGAATCTAAAGAAAATCTACCAAAAGATGGAAGGAATGCAAATTGAATCACAAGAGCATGATGCAGACGAAGCTGAAGTAATGAATGGAACAAATAAACAATAA 537 0.3706 MARHKVKLAYIECNAKRKASFRKRKIGILKKLKEITTLCGIEACAVIYGNNNPQPEVWPSDSGAKSVLSRFVNLPNPEKSKKTMDQEAFLGKSIEKAYEQLKKEREETRKIVMTIIMDHYINTKEFNGNSMSKYDLNDMSCFVDENLKKIYQKMEGMQIESQEHDADEAEVMNGTNKQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01564 178 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 Coils Coil 91 111 - -
Trre6g01564 178 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Trre6g01564 178 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Trre6g01564 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre6g01564 178 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre6g01564 178 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Trre6g01564 178 PANTHER MADS BOX PROTEIN 3 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01564 Trre-Chr6 12877748 12878420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01564 1 155 Type I MADS-box Gene Family AT5G48670 44.586 1.51e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre6g01564 SRF-TF 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01564 - - tpra:123917281 255.758