LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g01559	ATGACCGGTAGAAATATGGAACTTGAATACAAAACTGACAATTCCAAGAGGAAGTCAACATTTCAGAAAAGGAAAAATGGTATAATTAAGAAGGCTAAAGAAATCACCACTCTTTGTAGAACTGATACATGTGCTATTATCTATGAAGAGAACAATCCTCGAGCAACTGTTTTCCCTTCAAAAGATGGAGTCCAAAGGGTGTTGAACAAGTTTAGGAATTTTCCAGAATCAGAACAAAGGAAAACAATGGTGGATCATGAGGGGTTTGTGAGGCAATCCATAGAAAAGGCCCGTGCGAAGTTGAAGAAAGAAAAGGACAAATCAAAGAAGAAGGAAATGAATAATCAAATTGATTATTTCATTCAAACCGGTGAATTTGATGGATATGTAAGTGAGAGTGATCTCGAAGATTTGTCGTCACTTATTGATTCAAACATAAAGGAAGTCGAACATAGGATTGAATCGAGTCAAGCCCGGGAGGAAACTGACAATTGA	495	0.3697	MTGRNMELEYKTDNSKRKSTFQKRKNGIIKKAKEITTLCRTDTCAIIYEENNPRATVFPSKDGVQRVLNKFRNFPESEQRKTMVDHEGFVRQSIEKARAKLKKEKDKSKKKEMNNQIDYFIQTGEFDGYVSESDLEDLSSLIDSNIKEVEHRIESSQAREETDN	164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g01559	164	Gene3D	-	13	93	IPR036879	GO:0003677\|GO:0046983
	Trre6g01559	164	Coils	Coil	91	116	-	-
	Trre6g01559	164	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Trre6g01559	164	SUPERFAMILY	SRF-like	4	95	IPR036879	GO:0003677\|GO:0046983
	Trre6g01559	164	CDD	MADS_SRF_like	2	85	IPR033897	GO:0000981\|GO:0000987\|GO:0045944
	Trre6g01559	164	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	52	IPR002100	GO:0003677\|GO:0046983
	Trre6g01559	164	ProSiteProfiles	MADS-box domain profile.	1	52	IPR002100	GO:0003677\|GO:0046983
	Trre6g01559	164	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Trre6g01559	164	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Trre6g01559	164	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	6	157	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g01559	Trre-Chr6	12854708	12855690	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g01559	1	154	Type I MADS-box Gene Family	AT5G48670	40.645	9.38e-30	108

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Trre6g01559		SRF-TF	9.5e-14	No_clan