Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01553 ATGAATAATAATTCAAAGAGAAGTGGTGTAAGAAAGTACCACAAATCAGAACAGCCACGTTTGAGATGGACACCTGAGCTCCATGAATACTTTGTTCAAACTGTTGAAAGTCTTGGTGGAAAACATAAGGCAAGTCCAAAACACATTTTGAATATGATGCAAGTGAAGGGACTAAGAATCTCACACATTAAAAGTCATCTTCAGATGTACAGAAATGTGAAGGGGCAGAGGATTCTTACACCAATACTTGAAGAAAATGTACAATTCAATAATCACCCAACCTGCTCCACTTGTTCACCCCAGAGGTCGAGGAATATCAATCAAGACCTTCAGCCGTTATACAACAAAGGACTTTCACAAACAAGAGAAACGGATCATTATGATCTAAATCAGGAGCCTGAGTCAAGTGCATGCTTTCTTAGTGATATGTCAAATGAAGAAGGGAATAGTAGGGCTACAAAATATCTAAATCTCCCATTCCCTTTCAATTCTCTGTTAATTCCAATGCCAATGGTGCATAATGATCAAGGCAAAACACATTTTTCTTTACCAAATTCGACAGATGCTCACTTTGTAGACTCTAGTTCTATAAAATCTAATGGGAGTGATCATATAAACTTAGACCTATCAATTTGA 636 0.3711 MNNNSKRSGVRKYHKSEQPRLRWTPELHEYFVQTVESLGGKHKASPKHILNMMQVKGLRISHIKSHLQMYRNVKGQRILTPILEENVQFNNHPTCSTCSPQRSRNINQDLQPLYNKGLSQTRETDHYDLNQEPESSACFLSDMSNEEGNSRATKYLNLPFPFNSLLIPMPMVHNDQGKTHFSLPNSTDAHFVDSSSIKSNGSDHINLDLSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01553 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 110 IPR046955 GO:0003700
Trre6g01553 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Trre6g01553 211 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Trre6g01553 211 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Trre6g01553 211 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Trre6g01553 211 Gene3D - 18 75 - -
Trre6g01553 211 FunFam Two-component response regulator 14 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01553 Trre-Chr6 12807246 12811831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01553 2 78 G2-like Transcription Factor Family AT1G14600 59.740 2.25e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre6g01553 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01553 - - psat:127085289 309.301