Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01550 ATGGAATTTCTATCTTCTATTGTTGGAACAGTAGCAGAACATACTGTTGTGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAATTTCAGTATGTTAGCGGTTCGTGTTAAAGACCTTGAGGCTGCAAAAGAAAGAATGACCCATTCGGTTGAAGAAGAAAAGAGAAACGGTAAAAATATTGAAACAGATGTGATGAACTGGTTAGAGAAGGTTAATGAGCTCATTGAAAAGGCAAATCAGCTTCAGAGTGATCCTCGCCATGCCAATGCTAAGTGCTCAGTATGGCCGTTCCCCAATTTGATTTTACGTCATCAACTAAGTAGGAAGGCCACAAAAATTGTAAAAGATGTTTTTGAAGTTCAAGAAAAAGGAAAGTTTGATCGAATTGGTTACCTTCCCAACCTAGATGGAGAAGCCTCCTTCTCCTCCTCAACAAGAGGTGGTGAAAATTATGAGACAAGGGAATCACTTAAAGAGAACATTATGAAGGCACTACTAGCACACCATAGTTCATGCAACATTGGGGTCTATGGGTTGGGTGGGGTGGGTAAGACAACTCTGCTGGAGGAAGTTTTTGAAATGTCTAAGCAACAGAAATTGTTTGATACAGTTGTTACAGCCAATGTAACAAAAGATCCAGACATTAAAACAATTCAAGGGGAGATTGCAGATTTGTTGGGTCTACGATTCGATGAGGAGACTATTCTTGGAAGAGCACGTCGCCTAAGAGAAAGAATCATGATGGAAAATAATATCCTTGTTGTTCTAGATGATATATGGACCATACTTGATTTGAAGAAAGTTGGAATTCCATTTGGTAATGAACATAATGGTTGCAAATTGTTGATGACATCTAGAAATCAAGATGTGTTGTTCCAAATGGATGTTCCAAAGGATTTCACTTTCAAACTTGGACTTATGAGTGAAAATGAGACATGGACCTTGTTTCAATTTATGGCCGGTGATGTGGTTAAAGATAGCAATCTGAAAGGTGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTATGGTAGTGACGGTAGCCCGTGCAATGAAAAATAAGAGGGATGTTCAATCTTGGAAAGATGCATTAAGGAGATTAGAAAGTGGTTCTCATACAATTTCTTCTGCTTTGAAATTAAGTTACGACTCATTGGAGAGTGATGAAATGAGGGATGTCTTCTTGCTTTTTGCATTATTTCCAAATGAAAGGGTACATTACTTTCTAAAAGTTGCAATGGGTTTGGATATATTAAAGCATATTAAGACTGTGGATGATGCTAGAAACAGACTTTATTCAATAATCCATTCTTTGGAGGCGACTTGTTTGCTTGAAATTAAAACAAATGGAAATATCCAAATGCATGACTTTGTTCGTGATTTTGCTATCTTCATAGCACGTACGGACAAGCATGTATTTCTACGAAAACAATCAGACGAGGAATATCCAACCAAGGATTTTTTAAAAAGGTGCACGCAGGTCATTCTAGGCAAGTTTATGCATGGGCTTCCTCAAATGATTGATTGTCCAAACATTAAGTTTTTCTATTTGAACGGTAATAATCGTTCTTTAGAAGTCCCTGATGATTTTTTTGAGGGTATGGGAAGCCTTAGAGCCTTAGATTTAACATCTCTGAATTTGTCTTCATTACCCACTTCGTTTCGGTTCCTAACCGGCCTTCAAACATTGTGTTTGAATTTTTGCATTTTGGAAAATATGGTTGAAATAAATGCATTGCAAAATTTGGTAATTCTATGCCTTTGGGGTTCTTCAATGACCAAGTTGCCAAGAGAAATAGGGCAATTGACTCAATTAAGAATGCTTGATTTGAGCAGCACAGGAATAGAAGTAATTCCACCCAACATTTTATCAAGCTTGACTAAGCTGGAGGAATTGTACATGGGCAATACCTTTCTTAATTGGGAACATGTCAATTCGACAGCTCAAAACAAAAATGCTAGCATTGCTGAGCTTCGAAAACTACCCAACTTGACAACTCTAGAATTACAAATTCGCGAGACTTGGATGTTGCCAAGGGACTTGCAGACGGTGTTTGAGAAGTTGGAAAGATATAAAATAGTTATTGGTGATGTATGGGAATGGCCTGACATTGTGGATGGAATCTCAAAAACATTGATGCTCAAACTTGGTACTAACATACATTTGGAGCATGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTAGATGGAATTCAAAATGTGGTTTATCAACTAAATGGAGAAGGATTTCCATCGCTGAAACATCTCCACATCCAAAATAATGCAAACATGAATCATATTGTTGACTCTCAAGAGAGGAATCAATTGGATGTGTCCTTTCCCATCTTGGAAACACTAGTACTTTCTAATCTTAAAAACTTGGAGCATATATGTCTTGGTCCACTTTCAATTACCTCTTTTGGAAGTCTTAGTGTTATCAAAGTAAAAAATTGTGTCCAATTGAAATATCTTTTCTCCTTTACATTGGTTAAAGAACTTTCTCACCTTTCAGAGATTGAAGTTTGTCATTGCAATTCTATGAAGGAGATAGTGCTCGGAGACAACAATTTAAGTGCATCAACGGTTTTTCGATTTCGTTCTTTGACTTTAGAACATTTGGAGACACTTCAGAATTTCTTCTCCGGAAGTGAGCAAAAACATCAAGGGTTAGAGCCTTCTGTTTCTACACCATTGTTCAATGATCAGGTTGCATTTCCAGATTTGGATACCCTTAAATTGAGCTCTCTCAATTTGAATAAAATTTGGAATGACAATCATCATTCTATGTGCAACTTAACTAGCTTGATTGTGGAGAGTTGTGGTGGACTGAAGTACTTATTCTCATCTACCATGGTTGAAAGTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTCCATTGATGGAGGAGATAATAGCTAAAGAAGAAAGAAACAATGAAATAGAAGAGGTTAATTTTTTGAAATTAGAGAAAATCACTTTGAAGGACATGGACAACTTGAACACAACATGGCACCGCCAATTTGAAACAGTGAAGATGTTGCAAGTGAGGAATTGTAAGAAAATTGTTGTGCTTTAG 3120 0.3689 MEFLSSIVGTVAEHTVVPIGRQASYLIFYKGNFSMLAVRVKDLEAAKERMTHSVEEEKRNGKNIETDVMNWLEKVNELIEKANQLQSDPRHANAKCSVWPFPNLILRHQLSRKATKIVKDVFEVQEKGKFDRIGYLPNLDGEASFSSSTRGGENYETRESLKENIMKALLAHHSSCNIGVYGLGGVGKTTLLEEVFEMSKQQKLFDTVVTANVTKDPDIKTIQGEIADLLGLRFDEETILGRARRLRERIMMENNILVVLDDIWTILDLKKVGIPFGNEHNGCKLLMTSRNQDVLFQMDVPKDFTFKLGLMSENETWTLFQFMAGDVVKDSNLKGVAIQVAQKCEGLPLMVVTVARAMKNKRDVQSWKDALRRLESGSHTISSALKLSYDSLESDEMRDVFLLFALFPNERVHYFLKVAMGLDILKHIKTVDDARNRLYSIIHSLEATCLLEIKTNGNIQMHDFVRDFAIFIARTDKHVFLRKQSDEEYPTKDFLKRCTQVILGKFMHGLPQMIDCPNIKFFYLNGNNRSLEVPDDFFEGMGSLRALDLTSLNLSSLPTSFRFLTGLQTLCLNFCILENMVEINALQNLVILCLWGSSMTKLPREIGQLTQLRMLDLSSTGIEVIPPNILSSLTKLEELYMGNTFLNWEHVNSTAQNKNASIAELRKLPNLTTLELQIRETWMLPRDLQTVFEKLERYKIVIGDVWEWPDIVDGISKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVVYQLNGEGFPSLKHLHIQNNANMNHIVDSQERNQLDVSFPILETLVLSNLKNLEHICLGPLSITSFGSLSVIKVKNCVQLKYLFSFTLVKELSHLSEIEVCHCNSMKEIVLGDNNLSASTVFRFRSLTLEHLETLQNFFSGSEQKHQGLEPSVSTPLFNDQVAFPDLDTLKLSSLNLNKIWNDNHHSMCNLTSLIVESCGGLKYLFSSTMVESFKNLKHLEISNCPLMEEIIAKEERNNEIEEVNFLKLEKITLKDMDNLNTTWHRQFETVKMLQVRNCKKIVVL 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01550 1039 PRINTS Disease resistance protein signature 177 192 - -
Trre6g01550 1039 PRINTS Disease resistance protein signature 966 982 - -
Trre6g01550 1039 PRINTS Disease resistance protein signature 344 358 - -
Trre6g01550 1039 PRINTS Disease resistance protein signature 250 264 - -
Trre6g01550 1039 SUPERFAMILY L domain-like 459 831 - -
Trre6g01550 1039 Gene3D Ribonuclease Inhibitor 843 1039 IPR032675 -
Trre6g01550 1039 Gene3D - 310 393 IPR042197 -
Trre6g01550 1039 SUPERFAMILY L domain-like 729 1035 - -
Trre6g01550 1039 Coils Coil 68 88 - -
Trre6g01550 1039 Gene3D - 145 302 IPR027417 -
Trre6g01550 1039 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 36 892 - -
Trre6g01550 1039 Pfam NB-ARC domain 159 392 IPR002182 GO:0043531
Trre6g01550 1039 Gene3D Ribonuclease Inhibitor 502 793 IPR032675 -
Trre6g01550 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 403 IPR027417 -
Trre6g01550 1039 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01550 Trre-Chr6 12745739 12749161 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01550 178 677 WRKY Transcription Factor Family AT5G45050 25.505 2.50e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01550 - - mtr:25482804 1514.98