Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01546 ATGACCCATTCGGTTGAAGAAGAAAAGAGAAACGGTAAAAATATTGAAACAGATGTGATGAACTGGTTAGAGAAGGTTAATGAGCTCATTGAAAAGGCAAATCAGCTTCAGAGTGATCCTCGCCATGCCAATGCTAAGTGCTCAGTATGGCCGTTCCCCAATTTGATTTTACGTCATAAACTAAGTAGGAAGGCCACAAAAATTGTAAAAGATGTTATTGAAGTTCAAGAAAAAGGGAAGTTTGATCGAATTGGTTACCTTCCCAACCTAGATGGAGAAGCCTCCTTCTCCTCCTCAACAAGAGGTGGTGAAAATTATGAGACAAGGGAATCACTTAAAGAGAACATTATGAAGGCACTACTAGCACACCATAGTTCATGCAACATTGGGGTCTATGGGTTGGGTGGGGTGGGTAAGACAACTCTGCTGGAGGAAGTTTTTGAAATGTCTAAGCAACAGAAATTGTTTGATACAGTTGTTACAGCCAATGTAACAAAAGATCCAGACATTAAAACAATTCAAGGGGAGATTGCAGATTTGTTGGGTCTACGATTCGATGAGGAGACTATTCTTGGCAGAGCACGTCGCCTAAGAGAAAGAATCAAGATGGAGAAAAATATTCTTGTAATTCTAGATGATATATGGACCATACTTGATTTGAAGAAAGTTGGAATTCCATTTGGTGGTGAACATAATGGTTGCAAGTTGTTGATGGCATCTAGAAATCAAGATGTATTATTGCAAATGGATGTTCCAAAGGATTTCACTTTTAAACTTGGACTTATGAGTGAAAATGAGGCATGGAGCTTGTTTCAATTTAAGGCGGGTGATGTGGTTAACGATAGCAATTTGAAAGGGGTAGCAATTCAAGTAGCACATGAATGTGCAGGTTTGCCTCTTGTGGTAGTGGCGGTAGCTCGAGCATTGAAAGATAAGTGGGATGTTCAATCTTGGAAAGATGCATTAAGGAGATTACAAGGTGGTCATCATACAATTTATTCTGCTTTGGAATTGAGTTACGACTCATTGGAGAGTGACGAAGTGAGGGATATCTTCTTGCTTTTTGCAGTAATGCCAGATGAAGATGTACGGTACTTTTTGAAAGTTGCAATGGGTTTGGATATATTAAAGCATATTAAAACGGTAGATGATGCTAGAAACAGACTTTATTCAATAATCCATTCTTTGGAGGCGGCTAGTCTTTTGCTTGAAGTTAAAACAAGTGGAAATATCGAAATGCATGACTTTGTTCGCGATTTTGCTATCTCAATAGCACATAGGGACAAACATGTATTTTCAAGAAAACAATCAGATGAGGAATGTCCAACCAAGGATTTTTTAAAAAGGTGCACGCAGGTCATTCTAGGCAAGTTTATGCATGGGCTTCCTCAAATGATTGATTGTCCAAACATTAAGTTTTTCTATTTGAACGGTAATAATCGTTCTTTAGAAGTCCCTGATGATTTTTTTGAGGAAGTAATTCCACCCAACATTTTATCAAGCTTGACTAAGCTGGAGGAGTTGTACATGGGCAATACCTTTCTTAATTGGGAACATGTCAATTCGACAGCTCAAAACAAAAATGCTAGCATTGCTGAGCTTCGAAAACTACCCAACTTGACAACTCTAGAATTACAAATTCGCGAGACTTGGATGTTGCCAAGGGACTTGCAGACGGTGTTTGAGAAGTTGGAAAGATATAAAATAGTTATTGGTGATGTATGGGAATGGCCTGACATTGTGGATGGAATCTCAAAAACATTTATGCTCAAACTTGGTACTAACATACATTTTGAGCACGGAATTAAAGCATTGATCATAGGTGTTGAGAATTTGTACTTGGATGATGTAGATGGAATTCAAAATGTGGTTTATCAACTAAATGGAGAAGGATTTCCATCGCTGAAACATCTCCACATCCAAAATAATGCAAACATGAATCATATTGTTGACTCTCAAGAGAGGAATCAATTGGATGTGTCCTTTCCCATCTTGGAAACACTAGTACTTTCTAATCTTAAAAACTTGGAGCATATATGTCTTGGTCCACTTTCAATTACCTCTTTTGGAAGTCTTAGTGTTATCAAAGTAAAAAATTGTGTCCAATTGAAATATCTTTTCTCCATTACATTGGTTAAAGAACTTTCTCACCTTTCAGAGATTGAAGTTTGTCATTGCAATTCTATGAAGGTGATAGTGCTCGGAGACAACAATTTAAGTGCATCAACGGTTTTTCGATTTCGTTCTTTGACTTTAGAACATTTGGAGACACTTCAGAATTTCTTCTCCGGAAGTGAGCAAAAACATCAAGGGTTAGAGCCTTCTGTTTCTACACCATTGTTCAATGATCAGGTTGCATTTCCAGATTTGGATACCCTTAAATTGAGCTCTCTCAATTTGAATAAAATTTGGAATGACAATCATCATTCTATGTCCAACTTAACTAGCTTGATTGTGGAGAGTTGTGGTGGATTGAAGTACTTATTCTCATCTACTATGGTTGAAAGTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTCCATTGATGGAGGAGATAATAGCTAAAGAGGAGAGAAACAATGAAATAGAAGAGATTCATTTTTTGAAATTAGACAAAATCACTTTGAAGGACATGGACAACTTGAACACAACATGGCACCGCCAATTTGAAACAGTGAAGATGTTGCAAGTGAGGAATTGTAAGAAAATTGTTGTGGTTTTTCCTTCTTCAATGCAAGAAACATATAACAAGCTAGAGATGTTGGAGGTTACAGATTGTGCTTTAGTAGAAGAGATATTTGAATTGAGTTTCAATGAAAATAATAGCAATGTAGAGAATGCAACACATTTGAAAGTTGTTCTAGATGGATTGCCGAAACTGAAAAATATATGGAGTGGGGATTGTCTCAGAATTCTTAGTTTTCAAATTCTTATATTTGTAAAACTAAAAAATTGTGCAAGCTTGGAGTATCTATTACCACTTTCTATAGCCACTCGTTGTTCACATCTCAAAGAACTTCATATAGACAGATGTGGAAATATGAAGGAAATTGTTCCAGATGAAAAAGAATCCAGATTGAGTGTAGCTCCCACATTTGAGTTTAATCAACTAAGTTCTTTATTGCTTTGGAACTTGCATAAACTCAATGGTTTCTATGCTAAAAAGCATACTCTAGCATGTCCATCTTTGAAGAAAATTAATGTTTTCAAATGTGCAAAGTTGAATTTGTATAGAACTCTATCTACAAGTAACTCCAACTTTCAAGATGGCAAACTCTCCGTTTTAACCCAACAACCACCTTTCATTGTCGAAGAGTATCGGAGGAAGTAG 3336 0.3663 MTHSVEEEKRNGKNIETDVMNWLEKVNELIEKANQLQSDPRHANAKCSVWPFPNLILRHKLSRKATKIVKDVIEVQEKGKFDRIGYLPNLDGEASFSSSTRGGENYETRESLKENIMKALLAHHSSCNIGVYGLGGVGKTTLLEEVFEMSKQQKLFDTVVTANVTKDPDIKTIQGEIADLLGLRFDEETILGRARRLRERIKMEKNILVILDDIWTILDLKKVGIPFGGEHNGCKLLMASRNQDVLLQMDVPKDFTFKLGLMSENEAWSLFQFKAGDVVNDSNLKGVAIQVAHECAGLPLVVVAVARALKDKWDVQSWKDALRRLQGGHHTIYSALELSYDSLESDEVRDIFLLFAVMPDEDVRYFLKVAMGLDILKHIKTVDDARNRLYSIIHSLEAASLLLEVKTSGNIEMHDFVRDFAISIAHRDKHVFSRKQSDEECPTKDFLKRCTQVILGKFMHGLPQMIDCPNIKFFYLNGNNRSLEVPDDFFEEVIPPNILSSLTKLEELYMGNTFLNWEHVNSTAQNKNASIAELRKLPNLTTLELQIRETWMLPRDLQTVFEKLERYKIVIGDVWEWPDIVDGISKTFMLKLGTNIHFEHGIKALIIGVENLYLDDVDGIQNVVYQLNGEGFPSLKHLHIQNNANMNHIVDSQERNQLDVSFPILETLVLSNLKNLEHICLGPLSITSFGSLSVIKVKNCVQLKYLFSITLVKELSHLSEIEVCHCNSMKVIVLGDNNLSASTVFRFRSLTLEHLETLQNFFSGSEQKHQGLEPSVSTPLFNDQVAFPDLDTLKLSSLNLNKIWNDNHHSMSNLTSLIVESCGGLKYLFSSTMVESFKNLKHLEISNCPLMEEIIAKEERNNEIEEIHFLKLDKITLKDMDNLNTTWHRQFETVKMLQVRNCKKIVVVFPSSMQETYNKLEMLEVTDCALVEEIFELSFNENNSNVENATHLKVVLDGLPKLKNIWSGDCLRILSFQILIFVKLKNCASLEYLLPLSIATRCSHLKELHIDRCGNMKEIVPDEKESRLSVAPTFEFNQLSSLLLWNLHKLNGFYAKKHTLACPSLKKINVFKCAKLNLYRTLSTSNSNFQDGKLSVLTQQPPFIVEEYRRK 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01546 1111 Gene3D Ribonuclease Inhibitor 578 1013 IPR032675 -
Trre6g01546 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 354 IPR027417 -
Trre6g01546 1111 PRINTS Disease resistance protein signature 201 215 - -
Trre6g01546 1111 PRINTS Disease resistance protein signature 128 143 - -
Trre6g01546 1111 PRINTS Disease resistance protein signature 295 309 - -
Trre6g01546 1111 PRINTS Disease resistance protein signature 835 851 - -
Trre6g01546 1111 Coils Coil 19 39 - -
Trre6g01546 1111 Gene3D - 261 344 IPR042197 -
Trre6g01546 1111 Gene3D - 97 254 IPR027417 -
Trre6g01546 1111 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 954 1076 - -
Trre6g01546 1111 SUPERFAMILY L domain-like 627 934 - -
Trre6g01546 1111 Pfam NB-ARC domain 110 340 IPR002182 GO:0043531
Trre6g01546 1111 SUPERFAMILY L domain-like 413 1079 - -
Trre6g01546 1111 Gene3D Ribonuclease Inhibitor 457 577 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01546 Trre-Chr6 12712440 12723966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01546 129 448 WRKY Transcription Factor Family AT5G45050 25.680 2.60e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01546 - - adu:107474809 1020.38